Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   amyaer_RS15580 Genome accession   NZ_CP012375
Coordinates   3161318..3162958 (-) Length   546 a.a.
NCBI ID   WP_046663806.1    Uniprot ID   A0A0F6U698
Organism   Microcystis aeruginosa NIES-2481     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3156318..3167958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  amyaer_RS15555 (amyaer_3233) - 3156729..3157769 (+) 1041 WP_158524805.1 acyltransferase -
  amyaer_RS15560 (amyaer_3234) - 3157959..3159155 (-) 1197 WP_235614755.1 DUF4377 domain-containing protein -
  amyaer_RS15565 (amyaer_3235) - 3159772..3160116 (+) 345 WP_046662761.1 YbaB/EbfC family nucleoid-associated protein -
  amyaer_RS15570 (amyaer_3236) - 3160176..3160898 (+) 723 WP_201262018.1 pyridoxine 5'-phosphate synthase -
  amyaer_RS15575 (amyaer_3237) - 3160966..3161277 (+) 312 WP_002783106.1 MgPME-cyclase complex family protein -
  amyaer_RS15580 (amyaer_3238) comA 3161318..3162958 (-) 1641 WP_046663806.1 DUF655 domain-containing protein Machinery gene
  amyaer_RS15585 (amyaer_3239) - 3163187..3165613 (+) 2427 WP_046662763.1 dynamin-like GTPase family protein -
  amyaer_RS15590 (amyaer_3241) - 3165789..3166649 (+) 861 WP_046662764.1 formylglycine-generating enzyme family protein -
  amyaer_RS15595 (amyaer_3242) - 3166609..3167004 (+) 396 WP_036389149.1 nucleotidyltransferase family protein -
  amyaer_RS15600 (amyaer_3243) - 3166991..3167332 (+) 342 WP_002734383.1 HepT-like ribonuclease domain-containing protein -

Sequence

Protein


Download         Length: 546 a.a.        Molecular weight: 61659.49 Da        Isoelectric Point: 9.5624

>NTDB_id=153946 amyaer_RS15580 WP_046663806.1 3161318..3162958(-) (comA) [Microcystis aeruginosa NIES-2481]
MRAKMAIDKWRLKKILPMVQLGFLLGTVFLLGGCHSLNVIQNRPQPLPQDQYIQVYFNHNQARNSNYTDPYRQINRPGDN
LEQVIIDHINSAKISIDLAVQELRLPAIAQALATRQQQGIKVRVILENIYNKPINSLAKNQEQLSDREQERYQNLFDLVD
INRDGKLTPEEIAQRDAITILKKAGIPLIDDSTDRSKGSGLMHHKFMVIDNYTTLISSANYTLSDIHGDFSNPQTVGNAN
HLLVINNPPLARVFQREFNLMWGREDQHKFGLDKPQRKPQTILIGNSILTVKFSPDSTTYPWAITSNGLIGETLNKAKKS
VDLALFVFTEQPLANILAQRHQKGIEIKALIDPSFAFRYYSEGLDLLGVALSNKCRYEPDNQPWQNPINTLGVPALAPGD
KLHHKFGLIDDKIVITGSHNWSRAANHKNDEALVIIDNPTVAAHFDREFQYLYRTAKLGLPETIKNRIEQDRKNCPQSVT
IKSERLINLNTATKEELDSLPGISGKLAEKIIAARQQKPFTSLEDLDRVSGIGQGKINKLQGKVSW

Nucleotide


Download         Length: 1641 bp        

>NTDB_id=153946 amyaer_RS15580 WP_046663806.1 3161318..3162958(-) (comA) [Microcystis aeruginosa NIES-2481]
ATGCGGGCAAAAATGGCAATAGATAAATGGAGATTAAAAAAAATTCTGCCCATGGTACAGTTAGGATTTTTATTAGGAAC
AGTTTTTCTCTTGGGTGGTTGTCATTCTCTGAATGTTATCCAAAATCGTCCGCAACCCTTGCCCCAAGATCAATATATTC
AAGTCTATTTTAATCATAATCAAGCCCGAAATTCAAATTATACCGATCCCTATCGCCAAATTAATCGCCCAGGGGATAAT
TTAGAACAGGTTATTATTGATCATATCAACTCGGCAAAAATTTCGATCGATCTAGCAGTGCAAGAGTTACGTTTACCCGC
CATCGCTCAAGCTTTAGCTACTCGTCAGCAACAGGGAATTAAAGTTAGGGTTATCCTCGAAAATATTTACAATAAACCTA
TTAATAGTTTAGCCAAAAACCAAGAACAATTAAGTGATCGAGAACAGGAACGTTATCAAAATCTTTTTGACTTAGTTGAC
ATAAATCGCGATGGTAAATTAACTCCAGAGGAAATCGCCCAAAGAGATGCAATTACTATCCTCAAAAAAGCTGGTATTCC
CCTAATTGATGATAGCACTGATCGCTCAAAAGGTAGCGGTTTAATGCACCATAAATTCATGGTTATTGATAATTACACTA
CTTTAATCAGTTCAGCTAACTATACCTTAAGTGATATTCATGGAGACTTTTCTAATCCCCAAACTGTCGGGAATGCCAAT
CACTTATTAGTCATTAATAATCCCCCACTAGCTAGAGTTTTTCAAAGAGAATTTAATCTGATGTGGGGAAGGGAAGATCA
GCATAAATTTGGCTTAGATAAACCCCAGAGAAAACCGCAAACAATCCTTATCGGTAATAGTATTCTGACGGTAAAATTTT
CCCCCGATTCTACCACTTATCCCTGGGCAATTACTAGCAATGGTTTGATCGGTGAAACTTTAAATAAAGCTAAAAAATCC
GTGGATTTAGCCCTGTTTGTCTTTACGGAACAGCCTTTAGCTAATATTCTCGCCCAACGACATCAAAAAGGGATAGAAAT
TAAGGCTTTAATTGATCCTAGTTTTGCCTTCCGATACTATAGCGAAGGATTAGATTTATTAGGAGTTGCTCTCAGTAATA
AATGTCGTTATGAACCAGATAATCAGCCTTGGCAAAACCCAATTAATACCCTAGGAGTTCCCGCTCTAGCCCCGGGAGAT
AAATTACACCATAAATTCGGTTTAATCGATGATAAAATTGTGATTACTGGTTCTCATAATTGGTCAAGAGCCGCTAACCA
TAAAAACGATGAAGCTTTAGTTATTATCGATAATCCCACCGTTGCCGCTCATTTCGATCGAGAATTTCAATATCTTTACC
GTACCGCTAAATTAGGACTGCCGGAAACTATTAAAAATCGGATCGAACAGGATAGAAAAAACTGCCCCCAATCTGTAACA
ATTAAAAGCGAGCGCTTAATTAATTTAAACACCGCCACCAAAGAAGAATTAGATAGTTTACCCGGTATCAGTGGCAAATT
AGCTGAAAAAATTATCGCAGCCCGGCAACAAAAACCCTTTACTTCCCTAGAAGATTTGGATCGAGTATCGGGAATCGGTC
AGGGAAAAATCAACAAGCTGCAAGGCAAAGTCAGCTGGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(484-544)

PLD-like domain (PLDc_2)

(312-452)

PLD-like domain (PLDc_2)

(85-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F6U698

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

50.272

100

0.507

Multiple sequence alignment