Detailed information NTG0153776

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A6R75_RS17000
• Genome accession: NZ_CP015377
• Coordinates: 3620761..3621765 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain BAMCPA07-48
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3615761..3626765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6R75_RS16970 (A6R75_16970)	fghA	3615853..3616704 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
A6R75_RS16975 (A6R75_16975)	ispF	3616775..3617248 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A6R75_RS16980 (A6R75_16980)	truD	3617245..3618312 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
A6R75_RS16985 (A6R75_16985)	surE	3618300..3619049 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
A6R75_RS16990 (A6R75_16990)	-	3619082..3619717 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
A6R75_RS16995 (A6R75_16995)	-	3619763..3620656 (+)	894	WP_023092574.1	peptidoglycan DD-metalloendopeptidase family protein	-
A6R75_RS17000 (A6R75_17000)	rpoS	3620761..3621765 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
A6R75_RS17005 (A6R75_17005)	fdxA	3622192..3622515 (-)	324	WP_003092272.1	ferredoxin FdxA	-
A6R75_RS17010 (A6R75_17010)	mutS	3622582..3625149 (-)	2568	WP_079770997.1	DNA mismatch repair protein MutS	-
A6R75_RS17015 (A6R75_17015)	-	3625275..3626281 (-)	1007	Protein_3409	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=153776 A6R75_RS17000 WP_003113871.1 3620761..3621765(+) (rpoS) [Pseudomonas aeruginosa strain BAMCPA07-48]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=153776 A6R75_RS17000 WP_003113871.1 3620761..3621765(+) (rpoS) [Pseudomonas aeruginosa strain BAMCPA07-48]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCTTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653