Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AS891_RS20320 Genome accession   NZ_CP015375
Coordinates   3855755..3856885 (-) Length   376 a.a.
NCBI ID   WP_003243267.1    Uniprot ID   Q59HN8
Organism   Bacillus subtilis subsp. subtilis strain KCTC 3135     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3850755..3861885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS891_RS20275 (AS891_20270) cotJC 3850858..3851427 (-) 570 WP_003233850.1 spore coat protein CotJC -
  AS891_RS20280 (AS891_20275) cotJB 3851442..3851705 (-) 264 WP_003219491.1 spore coat protein CotJB -
  AS891_RS20285 (AS891_20280) cotJA 3851689..3851937 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  AS891_RS20290 (AS891_20285) yesF 3852064..3852924 (-) 861 WP_003243852.1 NAD-dependent epimerase/dehydratase family protein -
  AS891_RS20295 (AS891_20290) yesE 3852921..3853364 (-) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  AS891_RS20300 (AS891_20295) yezE 3853443..3854027 (-) 585 WP_003243181.1 TetR/AcrR family transcriptional regulator -
  AS891_RS20305 (AS891_20300) yeeK 3854142..3854579 (-) 438 WP_003244206.1 spore coat protein YeeK -
  AS891_RS20310 (AS891_20305) yeeI 3854713..3855432 (-) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AS891_RS20315 (AS891_20310) phrH 3855592..3855765 (-) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  AS891_RS20320 (AS891_20315) rapC 3855755..3856885 (-) 1131 WP_003243267.1 response regulator aspartate phosphatase RapH Regulator
  AS891_RS20325 (AS891_20320) - 3857047..3858069 (-) 1023 WP_003243884.1 hypothetical protein -
  AS891_RS20330 (AS891_20325) yeeF 3858281..3860290 (+) 2010 WP_003242909.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  AS891_RS20335 (AS891_20330) atxF 3860310..3860765 (+) 456 WP_010886434.1 TIGR01741 family protein -
  AS891_RS20340 (AS891_20335) yezA 3861005..3861211 (+) 207 WP_003233877.1 bacteriocin immunity protein -
  AS891_RS20345 (AS891_20340) - 3861278..3861583 (+) 306 WP_003242885.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44003.32 Da        Isoelectric Point: 5.7372

>NTDB_id=153696 AS891_RS20320 WP_003243267.1 3855755..3856885(-) (rapC) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=153696 AS891_RS20320 WP_003243267.1 3855755..3856885(-) (rapC) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGATCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGAAAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATCGAGACCCCTCAGAAAAAACTCACAGGTCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGATATTGAGAAAGCGGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGTAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3Q15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402