Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SEEP7378_RS13560 Genome accession   NZ_CP012346
Coordinates   2783513..2784118 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Panama str. ATCC 7378     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2778513..2789118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEEP7378_RS13545 (SEEP7378_013550) helD 2778730..2780784 (-) 2055 WP_000420515.1 DNA helicase IV -
  SEEP7378_RS13550 (SEEP7378_013555) - 2780908..2781354 (+) 447 WP_001261222.1 YccF domain-containing protein -
  SEEP7378_RS13555 (SEEP7378_013560) yccS 2781373..2783526 (+) 2154 WP_000950879.1 YccS family putative transporter -
  SEEP7378_RS13560 (SEEP7378_013565) sxy/tfoX 2783513..2784118 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  SEEP7378_RS13565 (SEEP7378_013570) sulA 2784335..2784844 (+) 510 WP_000288730.1 SOS-induced cell division inhibitor SulA -
  SEEP7378_RS13570 (SEEP7378_013575) ompA 2785201..2786253 (+) 1053 WP_001562588.1 porin OmpA -
  SEEP7378_RS13575 (SEEP7378_013580) matP 2786325..2786777 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  SEEP7378_RS13580 (SEEP7378_013585) - 2786963..2788723 (+) 1761 WP_000156463.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=153653 SEEP7378_RS13560 WP_001202375.1 2783513..2784118(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Panama str. ATCC 7378]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=153653 SEEP7378_RS13560 WP_001202375.1 2783513..2784118(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Panama str. ATCC 7378]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment