Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   AS891_RS14890 Genome accession   NZ_CP015375
Coordinates   2833037..2833468 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain KCTC 3135     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2828037..2838468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS891_RS14880 (AS891_14875) hexA 2829521..2832097 (-) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene
  AS891_RS14885 (AS891_14880) cotE 2832230..2832775 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  AS891_RS14890 (AS891_14885) ymcA 2833037..2833468 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  AS891_RS14895 (AS891_14890) miaB 2833470..2834999 (-) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AS891_RS14900 (AS891_14895) kbl 2835147..2836325 (-) 1179 WP_003231837.1 glycine C-acetyltransferase -
  AS891_RS14905 (AS891_14900) tdh 2836338..2837381 (-) 1044 WP_003244880.1 L-threonine 3-dehydrogenase -
  AS891_RS14910 (AS891_14905) spoVS 2837647..2837907 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=153648 AS891_RS14890 WP_003231834.1 2833037..2833468(-) (ymcA) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=153648 AS891_RS14890 WP_003231834.1 2833037..2833468(-) (ymcA) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1