Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AKI39_RS00745 Genome accession   NZ_CP012334
Coordinates   151456..152895 (-) Length   479 a.a.
NCBI ID   WP_066631534.1    Uniprot ID   A0A1B2QXM6
Organism   Bordetella sp. H567     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 146456..157895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKI39_RS00725 (AKI39_00725) - 147861..148550 (+) 690 WP_066631526.1 hypothetical protein -
  AKI39_RS00730 (AKI39_00730) bfr 148555..149031 (-) 477 WP_066631528.1 bacterioferritin -
  AKI39_RS00735 (AKI39_00735) - 149200..150117 (-) 918 WP_066631530.1 DMT family transporter -
  AKI39_RS00740 (AKI39_00740) - 150242..151153 (+) 912 WP_066631532.1 LysR family transcriptional regulator -
  AKI39_RS24785 - 151099..151371 (-) 273 WP_076879645.1 (2Fe-2S)-binding protein -
  AKI39_RS00745 (AKI39_00745) rpoN/rpoN1 151456..152895 (-) 1440 WP_066631534.1 RNA polymerase factor sigma-54 Machinery gene
  AKI39_RS00750 (AKI39_00750) - 152894..153598 (+) 705 WP_066631536.1 hypothetical protein -
  AKI39_RS00755 (AKI39_00755) - 153686..153904 (+) 219 WP_145925163.1 hypothetical protein -
  AKI39_RS00760 (AKI39_00760) leuA 154107..155822 (+) 1716 WP_066631540.1 2-isopropylmalate synthase -
  AKI39_RS00765 (AKI39_00765) - 155921..156721 (-) 801 WP_145925378.1 carbohydrate ABC transporter permease -
  AKI39_RS00770 (AKI39_00770) - 156808..157671 (-) 864 WP_066631542.1 sugar ABC transporter permease -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 52526.93 Da        Isoelectric Point: 5.3775

>NTDB_id=153575 AKI39_RS00745 WP_066631534.1 151456..152895(-) (rpoN/rpoN1) [Bordetella sp. H567]
MQNIVPMTRHALELRPGQHLALTPQLQQSIRMLQLSTLALEAEISQALDENPLLERDEDPAAEDIDSNREESAHEDDPTP
EREPAVDEMPGAKGVHADDDSDMPEAARGETLREHLLGQLALTRAGHRDAALVALLIDELDDNGYLGSPLEEILGWLPAE
IETDLDELRAALRLLQSFDPPGIGARDMAECLVLQLREPDLAALPEAAAPAVLACARRVCAEHLPLLAGANAARLREALQ
CDDATVRGARALILKLDPRPGRRWTVPVADYAIPDVIVRKARQGWRVVLNSAAMPRLRINGVYAQMLGNQREASHSALHA
QLQQARWMIRNVEQRFDTILRVAQAIVNHQSAFFSQGPSAMRPLILKDIAGELGLHESTISRATTQKYLLTPFGTMELKD
FFGAGVATDSGDAASATAVQAHIKRLVSEENRAKPLSDNQLMLKLAEQGIVIARRTVAKYRESMRIAPASVRKAQAALR

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=153575 AKI39_RS00745 WP_066631534.1 151456..152895(-) (rpoN/rpoN1) [Bordetella sp. H567]
ATGCAAAATATTGTACCTATGACGCGTCACGCCTTAGAACTCCGGCCCGGGCAACACCTTGCCCTGACCCCGCAGCTGCA
GCAGTCCATCCGGATGCTGCAGCTTTCGACGCTTGCGCTGGAGGCGGAAATCTCCCAGGCGCTGGACGAGAACCCGCTGC
TGGAGCGTGACGAGGACCCCGCCGCGGAAGACATCGACTCCAATCGCGAGGAATCGGCGCATGAAGACGATCCTACGCCG
GAACGCGAGCCGGCGGTGGACGAGATGCCTGGCGCCAAGGGCGTCCATGCGGACGACGACAGCGACATGCCGGAGGCCGC
CCGGGGCGAAACCCTGCGCGAACATCTCCTGGGCCAGCTGGCGCTGACGCGCGCCGGCCACCGCGATGCGGCCCTGGTCG
CCCTGCTGATCGACGAACTGGACGACAACGGCTACCTGGGATCGCCGCTGGAGGAAATCCTGGGCTGGCTGCCCGCCGAA
ATCGAGACCGATCTCGACGAGCTGCGGGCCGCGCTGCGGCTGTTGCAGTCCTTCGATCCGCCCGGCATCGGCGCGCGCGA
TATGGCGGAATGCCTGGTGCTGCAACTGCGGGAACCGGATCTCGCCGCCTTGCCGGAAGCGGCCGCCCCCGCGGTGCTGG
CCTGCGCGCGGCGCGTCTGCGCCGAACATCTGCCGCTATTGGCCGGCGCCAATGCGGCACGCCTGCGCGAAGCCCTGCAG
TGCGACGACGCCACGGTGCGCGGCGCCCGTGCCCTGATCCTGAAGCTGGACCCCCGTCCCGGCCGCCGCTGGACGGTGCC
GGTGGCCGATTACGCCATCCCGGACGTCATCGTGCGCAAGGCGCGCCAGGGCTGGCGCGTTGTGCTGAACAGCGCCGCCA
TGCCGCGCCTGCGCATCAACGGGGTGTACGCGCAGATGCTGGGCAACCAGCGCGAGGCCAGCCATTCCGCCTTGCACGCG
CAGCTGCAGCAGGCCCGCTGGATGATCCGCAATGTGGAACAGCGCTTCGATACCATCCTGCGGGTGGCGCAGGCCATCGT
GAACCACCAATCCGCCTTCTTCAGCCAGGGGCCCTCGGCCATGCGGCCCCTGATCCTGAAGGACATCGCCGGGGAATTGG
GCCTGCACGAGTCCACGATTTCACGGGCCACGACCCAGAAGTACCTGCTCACTCCGTTCGGCACGATGGAGCTGAAGGAT
TTCTTCGGCGCCGGCGTGGCCACCGATAGCGGCGACGCCGCATCGGCGACCGCGGTCCAGGCCCACATCAAGCGGCTGGT
GTCGGAAGAGAACCGCGCCAAGCCCTTGTCGGATAACCAGCTCATGCTCAAATTGGCCGAACAGGGGATCGTCATCGCGC
GGCGCACGGTGGCCAAATACCGGGAATCGATGCGCATCGCGCCGGCCTCGGTTCGCAAGGCGCAGGCGGCGCTGCGCTAG

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-473)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(106-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

47.835

100

0.507

Multiple sequence alignment