Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   AS891_RS01715 Genome accession   NZ_CP015375
Coordinates   336144..336374 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis strain KCTC 3135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 331144..341374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS891_RS01705 (AS891_01705) spoVT 331869..332405 (-) 537 WP_003218365.1 stage V sporulation protein T -
  AS891_RS01710 (AS891_01710) mfd 332541..336074 (-) 3534 WP_003243453.1 transcription-repair coupling factor -
  AS891_RS01715 (AS891_01715) subA/fin 336144..336374 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  AS891_RS01720 (AS891_01720) pth 336434..337000 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  AS891_RS01725 (AS891_01725) rplYB 337107..337721 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  AS891_RS01730 (AS891_01730) prsS 337806..338759 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  AS891_RS01735 (AS891_01735) glmU 338782..340152 (-) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  AS891_RS01745 (AS891_01745) spoVG 340345..340638 (-) 294 WP_003218346.1 septation regulator SpoVG -
  AS891_RS01750 (AS891_01750) ridA 340832..341209 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=153565 AS891_RS01715 WP_003243417.1 336144..336374(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=153565 AS891_RS01715 WP_003243417.1 336144..336374(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment