Detailed information NTG0153550

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: P40_RS18065
• Genome accession: NZ_CP012331
• Coordinates: 3902854..3904224 (+)
• Length: 456 a.a.
• NCBI ID: WP_080531523.1
• Uniprot ID: -
• Organism: Alloalcanivorax xenomutans strain P40
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3897854..3909224

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P40_RS18045 (P40_17835)	-	3898129..3898944 (+)	816	WP_022996657.1	outer membrane protein assembly factor BamD	-
P40_RS18050 (P40_17840)	-	3898997..3900622 (-)	1626	WP_026949554.1	NAD+ synthase	-
P40_RS18055 (P40_17845)	-	3900988..3901248 (+)	261	WP_022996659.1	PP0621 family protein	-
P40_RS18060 (P40_17850)	-	3901268..3902851 (+)	1584	WP_022996660.1	ATP-binding protein	-
P40_RS18065 (P40_17855)	pilR	3902854..3904224 (+)	1371	WP_080531523.1	sigma-54 dependent transcriptional regulator	Regulator
P40_RS18070 (P40_17860)	-	3904197..3905282 (-)	1086	WP_080531524.1	FAD-dependent oxidoreductase	-
P40_RS18075 (P40_17865)	-	3905411..3905899 (+)	489	WP_022996663.1	GspH/FimT family protein	-
P40_RS22630 (P40_17870)	-	3905929..3906348 (-)	420	WP_055099445.1	type IV pilin protein	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 50376.48 Da
• Isoelectric Point: 5.5116

>NTDB_id=153550 P40_RS18065 WP_080531523.1 3902854..3904224(+) (pilR) [Alloalcanivorax xenomutans strain P40]
MNDIIPRVLVVDDEADLRELLVITLGRMKLEATAADSLAAAQRLLDRDTFHLCLTDMNLGDGSGLQLIRYAAEKAPDMPI
AVLTAFGNMETATEAMKLGAYDFIAKPVSLDRLRQLIQDGLGISRHGAANGGEDDGLIGESPAMQHLRRQIRKLARSQAP
IYISGESGSGKEKVARLIHTLGPRGDHPFVAVNCGAIPSELMESEFFGHRKGSFTGAVEDRKGLFREADGGTLFLDEVAD
LPLHMQVKLLRAIQEKTVRPVGESREFSVNLRILCATHKDLSEEMQAGRFRQDLYYRLNVIEAHVPPLRERLEDVPALVE
HILSRLGIAWDTTPPTLSNGTLAALRDYPFPGNVRELENVLERAMTLCDGNVIEPAHLRLPSQASSEAPSQGGSRDPALP
LEDYLQDIERQEILKALDATHWNRTAAAKKLGMTFRSLRYRLKKLALDQEEEEGSA

Nucleotide

• Length: 1371 bp

>NTDB_id=153550 P40_RS18065 WP_080531523.1 3902854..3904224(+) (pilR) [Alloalcanivorax xenomutans strain P40]
ATGAATGACATAATTCCGCGTGTTTTGGTTGTGGACGACGAAGCGGACCTGAGAGAACTTCTGGTCATCACCCTCGGGCG
GATGAAATTGGAAGCAACGGCCGCGGACTCCCTGGCCGCCGCCCAGCGGCTGCTGGATCGCGACACCTTTCATCTTTGCC
TGACCGATATGAACCTGGGCGATGGCTCCGGTTTACAGCTGATCCGCTACGCGGCGGAGAAGGCGCCAGACATGCCCATC
GCGGTACTCACCGCATTCGGCAACATGGAGACCGCCACCGAAGCGATGAAACTGGGGGCCTACGATTTCATCGCCAAACC
CGTCTCGCTGGACCGGCTGCGGCAGTTGATTCAGGACGGCCTCGGCATCAGCCGCCATGGCGCCGCCAACGGCGGCGAGG
ACGATGGTCTGATTGGCGAGTCGCCGGCCATGCAGCATTTGCGACGGCAAATCCGCAAACTGGCACGCAGCCAGGCGCCA
ATCTACATCAGCGGCGAATCCGGCAGCGGCAAGGAAAAAGTGGCGCGTCTGATTCACACGCTGGGGCCGCGCGGTGACCA
CCCTTTCGTTGCGGTGAACTGCGGCGCCATCCCTTCCGAACTGATGGAAAGTGAATTTTTCGGTCACCGCAAAGGCAGTT
TCACCGGCGCCGTGGAAGACCGCAAAGGCCTGTTCCGGGAAGCGGACGGAGGCACCCTGTTTCTTGATGAGGTAGCGGAT
CTGCCTCTGCACATGCAGGTCAAGCTGCTGCGTGCGATTCAGGAGAAAACCGTGCGGCCGGTGGGCGAGTCACGGGAGTT
CAGCGTCAACCTGCGTATTCTTTGCGCCACCCACAAGGATCTCAGCGAGGAAATGCAGGCGGGCCGCTTTCGTCAGGACC
TCTACTACCGGCTGAATGTCATCGAGGCACACGTGCCGCCGCTGCGCGAGCGCCTGGAGGACGTTCCGGCGCTGGTTGAG
CATATCCTCTCCCGGCTTGGCATCGCCTGGGATACCACGCCGCCCACGCTCAGTAACGGTACTCTGGCGGCGCTGCGCGA
CTATCCGTTTCCCGGCAACGTGCGAGAGCTGGAAAACGTACTGGAGCGGGCCATGACCCTGTGTGATGGCAACGTTATCG
AACCGGCGCATCTGCGGCTACCCAGCCAGGCCAGCAGCGAAGCACCCAGCCAGGGCGGCAGCCGGGATCCGGCTTTGCCA
TTGGAGGATTATCTACAGGACATCGAGCGGCAGGAAATTCTCAAAGCGCTGGATGCCACCCACTGGAATCGCACCGCCGC
CGCCAAGAAGCTGGGTATGACGTTTCGCTCATTGCGTTACCGCTTGAAGAAACTGGCCCTGGATCAGGAAGAAGAGGAAG
GCAGCGCGTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-117)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.108	97.807	0.607
pilR	Acinetobacter baumannii strain A118	49.356	100	0.504
luxO	Vibrio cholerae strain A1552	41.379	89.035	0.368