Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AKO66_RS09435 Genome accession   NZ_CP012330
Coordinates   1826201..1826836 (-) Length   211 a.a.
NCBI ID   WP_057079360.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NJ-V     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1821201..1831836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKO66_RS09415 (AKO66_09360) - 1821568..1822272 (+) 705 WP_046343833.1 DnaD domain-containing protein -
  AKO66_RS09420 (AKO66_09365) nth 1822290..1822952 (+) 663 WP_057079358.1 endonuclease III -
  AKO66_RS09425 (AKO66_09370) - 1822949..1823458 (+) 510 WP_025207533.1 YpoC family protein -
  AKO66_RS09430 (AKO66_09375) - 1823494..1826181 (-) 2688 WP_057079359.1 PBP1A family penicillin-binding protein -
  AKO66_RS09435 (AKO66_09380) recU 1826201..1826836 (-) 636 WP_057079360.1 Holliday junction resolvase RecU Machinery gene
  AKO66_RS09440 (AKO66_09385) - 1826883..1827839 (+) 957 WP_017359732.1 DUF2515 domain-containing protein -
  AKO66_RS09445 (AKO66_09390) sspM 1827863..1827967 (-) 105 WP_017359731.1 acid-soluble spore protein SspM -
  AKO66_RS09450 (AKO66_09395) - 1828164..1828397 (+) 234 WP_231131595.1 DUF5446 family protein -
  AKO66_RS09455 (AKO66_09400) - 1828447..1828827 (+) 381 WP_225310452.1 YppE family protein -
  AKO66_RS09460 (AKO66_09405) - 1828936..1829388 (+) 453 WP_017359729.1 YppG family protein -
  AKO66_RS09465 (AKO66_09410) - 1829410..1829829 (-) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  AKO66_RS09470 (AKO66_09415) - 1829998..1830504 (+) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  AKO66_RS09475 (AKO66_09420) - 1830554..1831672 (-) 1119 WP_234780998.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24344.69 Da        Isoelectric Point: 9.6582

>NTDB_id=153504 AKO66_RS09435 WP_057079360.1 1826201..1826836(-) (recU) [Bacillus altitudinis strain NJ-V]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMMLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=153504 AKO66_RS09435 WP_057079360.1 1826201..1826836(-) (recU) [Bacillus altitudinis strain NJ-V]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGATGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGAAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.277

95.735

0.692

Multiple sequence alignment