Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | AKO66_RS08305 | Genome accession | NZ_CP012330 |
| Coordinates | 1619398..1619733 (-) | Length | 111 a.a. |
| NCBI ID | WP_017357978.1 | Uniprot ID | - |
| Organism | Bacillus altitudinis strain NJ-V | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1614398..1624733
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKO66_RS08255 (AKO66_08210) | comGC | 1614609..1614902 (+) | 294 | WP_057079311.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AKO66_RS08260 (AKO66_08215) | comGD | 1614895..1615341 (+) | 447 | WP_057079312.1 | competence type IV pilus minor pilin ComGD | - |
| AKO66_RS08265 (AKO66_08220) | comGE | 1615325..1615639 (+) | 315 | WP_057079313.1 | competence type IV pilus minor pilin ComGE | - |
| AKO66_RS08270 (AKO66_08225) | comGF | 1615581..1616078 (+) | 498 | WP_057079314.1 | competence type IV pilus minor pilin ComGF | - |
| AKO66_RS08275 (AKO66_08230) | - | 1616075..1616458 (+) | 384 | WP_057079315.1 | competence type IV pilus minor pilin ComGG | - |
| AKO66_RS08280 (AKO66_08235) | - | 1616519..1616707 (+) | 189 | WP_017367591.1 | YqzE family protein | - |
| AKO66_RS08285 (AKO66_08240) | - | 1616742..1617068 (-) | 327 | WP_048001387.1 | DUF3889 domain-containing protein | - |
| AKO66_RS08290 (AKO66_08245) | tapA | 1617321..1617848 (+) | 528 | WP_017367589.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AKO66_RS08295 (AKO66_08250) | sipW | 1617899..1618471 (+) | 573 | WP_017357979.1 | signal peptidase I SipW | - |
| AKO66_RS08300 (AKO66_08255) | tasA | 1618530..1619330 (+) | 801 | WP_008342195.1 | biofilm matrix protein TasA | - |
| AKO66_RS08305 (AKO66_08260) | sinR | 1619398..1619733 (-) | 336 | WP_017357978.1 | transcriptional regulator SinR | Regulator |
| AKO66_RS19500 | - | 1619767..1619931 (-) | 165 | WP_008342197.1 | anti-repressor SinI family protein | - |
| AKO66_RS08310 (AKO66_08265) | - | 1620116..1620913 (-) | 798 | WP_057079316.1 | YqhG family protein | - |
| AKO66_RS08315 (AKO66_08270) | - | 1620928..1622598 (-) | 1671 | WP_017367587.1 | DEAD/DEAH box helicase | - |
| AKO66_RS08320 (AKO66_08275) | gcvT | 1623160..1624257 (+) | 1098 | WP_057079317.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12936.47 Da Isoelectric Point: 4.8062
>NTDB_id=153501 AKO66_RS08305 WP_017357978.1 1619398..1619733(-) (sinR) [Bacillus altitudinis strain NJ-V]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=153501 AKO66_RS08305 WP_017357978.1 1619398..1619733(-) (sinR) [Bacillus altitudinis strain NJ-V]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |