Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   Aba3207_RS00425 Genome accession   NZ_CP015364
Coordinates   82988..83368 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   A0ABX6CGB7
Organism   Acinetobacter baumannii strain 3207     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 77988..88368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba3207_RS00395 (Aba3207_00395) kdsB 78891..79652 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Aba3207_RS00400 (Aba3207_00400) - 79664..80644 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  Aba3207_RS00405 (Aba3207_00405) - 80656..80997 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  Aba3207_RS00410 (Aba3207_00410) - 81015..81788 (+) 774 WP_000497301.1 TatD family hydrolase -
  Aba3207_RS00415 (Aba3207_00415) - 81826..82434 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  Aba3207_RS00420 (Aba3207_00420) - 82444..82998 (+) 555 WP_000841373.1 type II secretion system protein -
  Aba3207_RS00425 (Aba3207_00425) xcpV 82988..83368 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  Aba3207_RS00430 (Aba3207_00430) xcpW 83368..84069 (+) 702 WP_000594590.1 type II secretion system minor pseudopilin GspJ Machinery gene
  Aba3207_RS00435 (Aba3207_00435) gspK 84069..85028 (+) 960 WP_000301471.1 type II secretion system minor pseudopilin GspK -
  Aba3207_RS00440 (Aba3207_00440) - 85259..85855 (+) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  Aba3207_RS00445 (Aba3207_00445) ung 85906..86619 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  Aba3207_RS00450 (Aba3207_00450) - 86616..87740 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  Aba3207_RS00455 (Aba3207_00455) tadA 87747..88250 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=153485 Aba3207_RS00425 WP_000836911.1 82988..83368(+) (xcpV) [Acinetobacter baumannii strain 3207]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=153485 Aba3207_RS00425 WP_000836911.1 82988..83368(+) (xcpV) [Acinetobacter baumannii strain 3207]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1