Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AKO66_RS00240 Genome accession   NZ_CP012330
Coordinates   45491..45781 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NJ-V     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40491..50781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKO66_RS00225 (AKO66_00225) - 40675..41877 (-) 1203 WP_057078752.1 G5 and 3D domain-containing protein -
  AKO66_RS00230 (AKO66_00230) - 42122..42889 (-) 768 WP_017359325.1 TatD family hydrolase -
  AKO66_RS00235 (AKO66_00235) metG 42971..44971 (-) 2001 WP_057078754.1 methionine--tRNA ligase -
  AKO66_RS00240 (AKO66_00240) abrB 45491..45781 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AKO66_RS00245 (AKO66_00245) rsmI 45826..46707 (-) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AKO66_RS00250 (AKO66_00250) - 46682..46981 (-) 300 WP_048002281.1 GIY-YIG nuclease family protein -
  AKO66_RS00255 (AKO66_00255) - 46968..47711 (-) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AKO66_RS00260 (AKO66_00260) yabA 47767..48120 (-) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  AKO66_RS00265 (AKO66_00265) - 48135..48962 (-) 828 WP_007496230.1 stage 0 sporulation family protein -
  AKO66_RS00270 (AKO66_00270) holB 48965..49954 (-) 990 WP_057078756.1 DNA polymerase III subunit delta' -
  AKO66_RS00275 (AKO66_00275) - 49966..50406 (-) 441 WP_035391564.1 YaaR family protein -
  AKO66_RS00280 (AKO66_00280) - 50419..50748 (-) 330 WP_012008640.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=153472 AKO66_RS00240 WP_087975202.1 45491..45781(+) (abrB) [Bacillus altitudinis strain NJ-V]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=153472 AKO66_RS00240 WP_087975202.1 45491..45781(+) (abrB) [Bacillus altitudinis strain NJ-V]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment