Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | A6E92_RS18305 | Genome accession | NZ_CP015362 |
| Coordinates | 4294406..4296934 (+) | Length | 842 a.a. |
| NCBI ID | WP_028416136.1 | Uniprot ID | A0ABY2PC07 |
| Organism | Streptomyces sp. S8 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 4289406..4301934
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6E92_RS18265 (A6E92_17940) | - | 4289935..4290732 (+) | 798 | WP_018489334.1 | type III pantothenate kinase | - |
| A6E92_RS18270 (A6E92_17945) | - | 4290894..4291475 (+) | 582 | WP_028416132.1 | hypothetical protein | - |
| A6E92_RS18275 (A6E92_17950) | - | 4291568..4291747 (+) | 180 | WP_018489332.1 | hypothetical protein | - |
| A6E92_RS18280 (A6E92_17955) | - | 4291880..4292287 (+) | 408 | WP_019764901.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| A6E92_RS18285 (A6E92_17960) | - | 4292298..4292867 (+) | 570 | WP_084994353.1 | amino-acid N-acetyltransferase | - |
| A6E92_RS18290 (A6E92_17965) | - | 4293037..4293372 (+) | 336 | WP_018489329.1 | Lsr2 family protein | - |
| A6E92_RS33850 | - | 4293351..4293955 (-) | 605 | Protein_3625 | SCO3374 family protein | - |
| A6E92_RS18305 (A6E92_17970) | clpC | 4294406..4296934 (+) | 2529 | WP_028416136.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| A6E92_RS18310 (A6E92_17975) | - | 4298054..4298743 (+) | 690 | WP_084994356.1 | M23 family metallopeptidase | - |
| A6E92_RS18315 (A6E92_17980) | cseC | 4298976..4300313 (-) | 1338 | WP_084994359.1 | two-component system sensor histidine kinase CseC | - |
| A6E92_RS18320 (A6E92_17985) | cseB | 4300576..4301289 (-) | 714 | WP_018489324.1 | two-component system response regulator CseB | - |
Sequence
Protein
Download Length: 842 a.a. Molecular weight: 93052.27 Da Isoelectric Point: 5.8261
>NTDB_id=153457 A6E92_RS18305 WP_028416136.1 4294406..4296934(+) (clpC) [Streptomyces sp. S8]
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSGGKETAAAGGPAEG
TPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLK
DKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGAT
TLDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLI
DEAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGEL
IAEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELS
KTLAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILE
DGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDVKTNYERMKVKVNEELKQHFRPEFLNRVDDTVVFHQL
TEEDIIQIVDLMLAKVDERLKDRDMGIELSSEAKSLLAKRGYDPVMGARPLRRTIQREIEDVLSEKILFGELRPGHIVVV
GVEGEGDDAKFSFRGEEKSALPDVPPIEQAAGGAGPNLSKDA
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSGGKETAAAGGPAEG
TPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLK
DKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGAT
TLDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLI
DEAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGEL
IAEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELS
KTLAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILE
DGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDVKTNYERMKVKVNEELKQHFRPEFLNRVDDTVVFHQL
TEEDIIQIVDLMLAKVDERLKDRDMGIELSSEAKSLLAKRGYDPVMGARPLRRTIQREIEDVLSEKILFGELRPGHIVVV
GVEGEGDDAKFSFRGEEKSALPDVPPIEQAAGGAGPNLSKDA
Nucleotide
Download Length: 2529 bp
>NTDB_id=153457 A6E92_RS18305 WP_028416136.1 4294406..4296934(+) (clpC) [Streptomyces sp. S8]
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCTAAGGCCCTGGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGGCAGGGCCAGCAGGCTCCGTCCGGGCACATCCCCTTC
ACTCCGCGAGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTTCAGCTGGGCCACAACTACATCGGCACCGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTCGTGAAGCTGGGCGCCGACCTGAACCGGG
TCCGGCAGCAGGTCATCCAGCTGCTTTCGGGCTACTCGGGCGGCAAGGAGACGGCGGCCGCGGGCGGCCCCGCGGAGGGC
ACGCCCTCCACCTCCCTGGTGCTCGACCAGTTCGGCCGGAACCTCACCCAGGCCGCTCGTGAGTCCAAGCTCGACCCGGT
CATCGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGGACCAAGAACAACCCGGTCCTCATCGGCG
AGCCCGGCGTCGGCAAGACGGCGGTCGTCGAGGGCCTGGCCCAGGCGATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAG
GACAAGCACCTCTACACCCTGGACCTCGGCGCCCTGGTCGCCGGTTCGCGGTACCGGGGTGACTTCGAGGAGCGCCTGAA
GAAGGTCCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTGGTCGGTGCGGGTG
CCGCCGAGGGCGCCATCGACGCGGCGAGCATCCTCAAGCCCATGCTGGCGCGAGGCGAGCTGCAGACCATCGGTGCCACC
ACGCTCGACGAGTACCGCAAGCACCTGGAGAAGGACGCGGCCCTCGAGCGCCGCTTCCAGCCGATCCAGGTCGCGGAGCC
GTCGCTGCCGCACACCATCGAGATCCTGAAGGGTCTGCGCGACCGTTACGAGGCCCACCACCGGGTCTCCATCACGGACG
AGGCCCTCGTCCAGGCCGCGACCCTGGCCGACCGGTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATC
GACGAGGCCGGATCGAGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTCCGCGAGTTCGACGAGAAGATCGCGGG
CGTCCGCCGCGACAAGGAGTCGGCCATCGACTCCCAGGACTTCGAGAAGGCAGCCTCCCTCCGCGACAAGGAGAAGCAGC
TGCTGGCGGCGAAGGCCAAGCGGGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTG
ATCGCCGAGGTCCTGGCCACCGCCACCGGCATCCCCGTCTTCAAGCTGACGGAGGAGGAGTCCTCCCGTCTGCTGCGCAT
GGAGGACGAGCTCCACAAGCGCGTCATCGGCCAGAAGGACGCCATCAAGGCCCTCTCGCAGGCGATCCGCCGTACGCGAG
CCGGTCTGAAGGACCCGAAGCGCCCCGGTGGCTCGTTCATCTTCGCCGGTCCGTCCGGTGTCGGTAAGACGGAGCTGTCC
AAGACGCTCGCCGAATTCCTCTTCGGCGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACAC
GGTTTCCCGCCTCTTCGGTTCGCCCCCCGGCTACGTGGGCTACGAGGAGGGCGGCCAGCTCACCGAGAAGGTGCGCCGCA
AGCCGTTCTCCGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCCGATATCTTCAATTCCCTGCTCCAGATTCTGGAG
GACGGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGGAC
CCGGGACATCTCCAAGGGCTTCAACCTGGGCTTCGCCGCCCAGGGCGACGTCAAGACCAACTACGAGCGCATGAAGGTCA
AGGTCAACGAAGAGCTCAAGCAGCACTTCCGGCCGGAATTCCTCAACCGTGTCGACGACACGGTGGTCTTCCACCAGCTG
ACCGAGGAAGACATCATCCAGATCGTCGACCTCATGCTCGCCAAGGTCGACGAGCGGCTCAAGGACCGCGACATGGGCAT
CGAGCTCAGCTCCGAGGCCAAGTCGCTCCTGGCGAAGAGGGGCTACGACCCCGTGATGGGCGCCCGGCCGCTGCGCCGGA
CGATCCAGCGCGAGATCGAGGACGTCCTCTCCGAGAAGATCCTCTTCGGTGAGCTGCGCCCCGGTCACATCGTGGTCGTC
GGCGTCGAGGGCGAGGGCGACGACGCGAAGTTCTCGTTCCGCGGCGAGGAGAAGTCGGCCCTGCCCGACGTCCCCCCGAT
CGAGCAGGCGGCAGGCGGCGCCGGCCCGAACCTGTCGAAGGACGCGTGA
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCTAAGGCCCTGGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGGCAGGGCCAGCAGGCTCCGTCCGGGCACATCCCCTTC
ACTCCGCGAGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTTCAGCTGGGCCACAACTACATCGGCACCGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTCGTGAAGCTGGGCGCCGACCTGAACCGGG
TCCGGCAGCAGGTCATCCAGCTGCTTTCGGGCTACTCGGGCGGCAAGGAGACGGCGGCCGCGGGCGGCCCCGCGGAGGGC
ACGCCCTCCACCTCCCTGGTGCTCGACCAGTTCGGCCGGAACCTCACCCAGGCCGCTCGTGAGTCCAAGCTCGACCCGGT
CATCGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGGACCAAGAACAACCCGGTCCTCATCGGCG
AGCCCGGCGTCGGCAAGACGGCGGTCGTCGAGGGCCTGGCCCAGGCGATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAG
GACAAGCACCTCTACACCCTGGACCTCGGCGCCCTGGTCGCCGGTTCGCGGTACCGGGGTGACTTCGAGGAGCGCCTGAA
GAAGGTCCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTGGTCGGTGCGGGTG
CCGCCGAGGGCGCCATCGACGCGGCGAGCATCCTCAAGCCCATGCTGGCGCGAGGCGAGCTGCAGACCATCGGTGCCACC
ACGCTCGACGAGTACCGCAAGCACCTGGAGAAGGACGCGGCCCTCGAGCGCCGCTTCCAGCCGATCCAGGTCGCGGAGCC
GTCGCTGCCGCACACCATCGAGATCCTGAAGGGTCTGCGCGACCGTTACGAGGCCCACCACCGGGTCTCCATCACGGACG
AGGCCCTCGTCCAGGCCGCGACCCTGGCCGACCGGTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATC
GACGAGGCCGGATCGAGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTCCGCGAGTTCGACGAGAAGATCGCGGG
CGTCCGCCGCGACAAGGAGTCGGCCATCGACTCCCAGGACTTCGAGAAGGCAGCCTCCCTCCGCGACAAGGAGAAGCAGC
TGCTGGCGGCGAAGGCCAAGCGGGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTG
ATCGCCGAGGTCCTGGCCACCGCCACCGGCATCCCCGTCTTCAAGCTGACGGAGGAGGAGTCCTCCCGTCTGCTGCGCAT
GGAGGACGAGCTCCACAAGCGCGTCATCGGCCAGAAGGACGCCATCAAGGCCCTCTCGCAGGCGATCCGCCGTACGCGAG
CCGGTCTGAAGGACCCGAAGCGCCCCGGTGGCTCGTTCATCTTCGCCGGTCCGTCCGGTGTCGGTAAGACGGAGCTGTCC
AAGACGCTCGCCGAATTCCTCTTCGGCGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACAC
GGTTTCCCGCCTCTTCGGTTCGCCCCCCGGCTACGTGGGCTACGAGGAGGGCGGCCAGCTCACCGAGAAGGTGCGCCGCA
AGCCGTTCTCCGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCCGATATCTTCAATTCCCTGCTCCAGATTCTGGAG
GACGGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGGAC
CCGGGACATCTCCAAGGGCTTCAACCTGGGCTTCGCCGCCCAGGGCGACGTCAAGACCAACTACGAGCGCATGAAGGTCA
AGGTCAACGAAGAGCTCAAGCAGCACTTCCGGCCGGAATTCCTCAACCGTGTCGACGACACGGTGGTCTTCCACCAGCTG
ACCGAGGAAGACATCATCCAGATCGTCGACCTCATGCTCGCCAAGGTCGACGAGCGGCTCAAGGACCGCGACATGGGCAT
CGAGCTCAGCTCCGAGGCCAAGTCGCTCCTGGCGAAGAGGGGCTACGACCCCGTGATGGGCGCCCGGCCGCTGCGCCGGA
CGATCCAGCGCGAGATCGAGGACGTCCTCTCCGAGAAGATCCTCTTCGGTGAGCTGCGCCCCGGTCACATCGTGGTCGTC
GGCGTCGAGGGCGAGGGCGACGACGCGAAGTTCTCGTTCCGCGGCGAGGAGAAGTCGGCCCTGCCCGACGTCCCCCCGAT
CGAGCAGGCGGCAGGCGGCGCCGGCCCGAACCTGTCGAAGGACGCGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
60.806 |
97.268 |
0.591 |
| clpC | Streptococcus mutans UA159 |
44.699 |
98.575 |
0.441 |
| clpC | Streptococcus thermophilus LMG 18311 |
43.494 |
98.575 |
0.429 |
| clpC | Streptococcus thermophilus LMD-9 |
43.546 |
98.456 |
0.429 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.335 |
96.437 |
0.428 |
| clpC | Streptococcus pneumoniae Rx1 |
44.154 |
95.487 |
0.422 |
| clpC | Streptococcus pneumoniae D39 |
44.154 |
95.487 |
0.422 |
| clpC | Streptococcus pneumoniae TIGR4 |
43.905 |
95.487 |
0.419 |
| clpE | Streptococcus mutans UA159 |
53.994 |
74.347 |
0.401 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.201 |
75.534 |
0.394 |
| clpE | Streptococcus pneumoniae R6 |
52.044 |
75.534 |
0.393 |
| clpE | Streptococcus pneumoniae Rx1 |
52.044 |
75.534 |
0.393 |
| clpE | Streptococcus pneumoniae D39 |
52.044 |
75.534 |
0.393 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
51.326 |
76.128 |
0.391 |