Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   A6E92_RS16030 Genome accession   NZ_CP015362
Coordinates   3776516..3777646 (+) Length   376 a.a.
NCBI ID   WP_070200772.1    Uniprot ID   A0ABY2PP73
Organism   Streptomyces sp. S8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3771516..3782646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6E92_RS16020 (A6E92_15725) dnaN 3774292..3775422 (+) 1131 WP_015609839.1 DNA polymerase III subunit beta -
  A6E92_RS16025 (A6E92_15730) gnd 3775565..3776449 (+) 885 WP_018489829.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  A6E92_RS16030 (A6E92_15735) recF 3776516..3777646 (+) 1131 WP_070200772.1 DNA replication/repair protein RecF Machinery gene
  A6E92_RS16035 (A6E92_15740) - 3777877..3778371 (+) 495 WP_028415817.1 DciA family protein -
  A6E92_RS16040 (A6E92_15745) gyrB 3778815..3780884 (+) 2070 WP_018489826.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40795.47 Da        Isoelectric Point: 7.1489

>NTDB_id=153450 A6E92_RS16030 WP_070200772.1 3776516..3777646(+) (recF) [Streptomyces sp. S8]
MHVTHLSLADFRSYARVEVPLDPGVTVFVGPNGQGKTNLVEAIGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLAEKAYGDVAPGGGPVTLEYRSSVGEDVA
AGRTREELYEQLIAALAGVRKQEIERGVTLVGPHRDDLVLSLRGMPAKGYASHGESWSYALALRLASYELLRAEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVAEDVPGALAGARYAVSAGEVERA

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=153450 A6E92_RS16030 WP_070200772.1 3776516..3777646(+) (recF) [Streptomyces sp. S8]
ATGCACGTCACCCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTGCCTCTCGACCCGGGCGTCACCGT
GTTCGTGGGGCCCAACGGGCAGGGCAAGACCAATCTCGTCGAGGCGATCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCACCGCTGGTGCGGATGGGTGCCGAGCGGGCCGTGATCCGGGCGGCGGTGACCCAGGGCGAGCGCTCG
CAGCTGATCGAGCTGGAGCTGAACCCCGGCCGCGCCAACCGGGCCCGTATCAACAGGTCCTCGCAGGTCAGACCGCGTGA
TGTGCTCGGCATCGTCCGGACGGTGCTCTTCGCTCCGGAGGACCTGGCGCTGGTCAAGGGCGACCCCGGGGAGCGGCGGC
GGTTCCTGGACGAGCTGGTCACCGCGCGCTCGCCCCGGATGGCCGGGGTCCGCTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACCCTGCTGAAGTCCGCCGCGATGGCCCGCCGCCACGGCGGCCGCTCCATGGACCTGTCCACCCTCGACGTCTG
GGACCAGCACCTGGGCCGGGTCGGCGCCGAGCTGCTCGCGCAGCGCCTGGACCTGATCGCCACGCTCCAGCCGCTGGCCG
AGAAGGCGTACGGGGACGTGGCGCCGGGCGGCGGTCCGGTGACGCTGGAGTACCGCAGCTCGGTGGGCGAGGACGTGGCG
GCGGGCCGTACCCGCGAGGAGCTGTACGAGCAGCTGATCGCGGCGCTCGCCGGGGTCCGGAAGCAGGAGATCGAGCGCGG
GGTGACGCTGGTCGGCCCGCACCGGGACGACCTGGTGCTGAGCCTGCGGGGGATGCCCGCGAAGGGGTACGCAAGCCACG
GCGAGTCCTGGAGCTACGCGCTGGCGCTGCGGCTGGCCAGTTACGAGCTGCTGCGCGCCGAGGGCAATGAGCCGGTGCTC
GTCCTGGACGACGTCTTCGCCGAGCTGGACGCCCGCCGCCGGGAGCGGCTGGCGGAGCTGGTGGCCCCGGGCGAGCAGGT
GCTCGTGACGGCGGCGGTGGCGGAGGACGTGCCGGGTGCGCTGGCGGGGGCGCGGTACGCGGTGTCGGCGGGCGAGGTGG
AGCGGGCATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.978

97.34

0.37

Multiple sequence alignment