Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   A6E92_RS13965 Genome accession   NZ_CP015362
Coordinates   3341972..3342637 (+) Length   221 a.a.
NCBI ID   WP_028419540.1    Uniprot ID   -
Organism   Streptomyces sp. S8     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3336972..3347637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6E92_RS13945 (A6E92_13685) - 3337706..3339134 (-) 1429 Protein_2778 hypothetical protein -
  A6E92_RS13950 (A6E92_13690) - 3339131..3339727 (-) 597 WP_018489011.1 ankyrin repeat domain-containing protein -
  A6E92_RS13955 (A6E92_13695) - 3339783..3340340 (-) 558 WP_018489010.1 heme-binding protein -
  A6E92_RS13960 (A6E92_13700) - 3340573..3341892 (+) 1320 WP_084993354.1 sensor histidine kinase -
  A6E92_RS13965 (A6E92_13705) vraR 3341972..3342637 (+) 666 WP_028419540.1 response regulator transcription factor Regulator
  A6E92_RS13970 (A6E92_13710) - 3342694..3343191 (+) 498 WP_028419539.1 hypothetical protein -
  A6E92_RS13975 (A6E92_13715) - 3343366..3344085 (-) 720 WP_239008827.1 pentapeptide repeat-containing protein -
  A6E92_RS13980 (A6E92_13720) - 3344186..3345391 (+) 1206 WP_084993358.1 NAD(P)-binding protein -
  A6E92_RS13985 (A6E92_13725) - 3345516..3346436 (-) 921 WP_084997068.1 aminoglycoside phosphotransferase family protein -
  A6E92_RS13990 (A6E92_13730) - 3346471..3347247 (+) 777 WP_084993360.1 rhomboid-like protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23207.56 Da        Isoelectric Point: 5.1153

>NTDB_id=153446 A6E92_RS13965 WP_028419540.1 3341972..3342637(+) (vraR) [Streptomyces sp. S8]
MTGEATASPAPAPSPAPVRILLCDDHVVVRAGLLALLGSEPDIEVVGEAGSGEEAVVLAARLTPDVVLMDLQLGAGIDGV
EATRRIAADGTVHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRSAAQGRTTLSAPVASRVMARMRSPRPSL
TDRERDILAQLSQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=153446 A6E92_RS13965 WP_028419540.1 3341972..3342637(+) (vraR) [Streptomyces sp. S8]
ATGACCGGCGAGGCGACCGCGTCCCCCGCTCCCGCCCCTTCCCCCGCCCCCGTCCGCATCCTGCTCTGCGACGACCACGT
GGTCGTCCGCGCCGGGCTGCTGGCCCTCCTCGGCAGCGAACCGGACATCGAGGTCGTCGGGGAGGCGGGCAGCGGCGAGG
AGGCCGTGGTGCTCGCCGCCCGCCTCACCCCCGACGTCGTCCTCATGGACCTCCAGCTCGGCGCGGGCATCGACGGCGTG
GAGGCCACCCGCCGCATCGCCGCCGACGGCACGGTCCACGTCCTGGTGCTGACCACGTACGACACGGACGCCGACATCAC
CCGCGCCATCGAGGCCGGGGCCACCGGCTATCTGCTGAAGGCCGAGCGGCCTGAGGAGCTGTTCGCCGCCATCCGCTCGG
CCGCCCAGGGCCGCACCACGCTCTCGGCCCCCGTCGCCAGCCGGGTCATGGCCCGGATGCGCAGCCCCCGCCCGAGCCTC
ACCGACCGCGAACGCGACATCCTGGCCCAGCTCTCCCAGGGGCTCGGCAACCGGGACATCGCCCGCGCCCTCTTCATCAG
CGAGGCCACGGTCAAGACCCACCTGGGCCGCATCTACGACAAGCTCGGCGTCGACACCCGCGCGGGCGCGGTCTCGGTGG
CGAAGGAACAGCGGCTGCTGCCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-214)

Response regulator receiver domain (Response_reg)

(20-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.462

94.118

0.362

Multiple sequence alignment