Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AKO65_RS04160 Genome accession   NZ_CP012329
Coordinates   845437..846549 (-) Length   370 a.a.
NCBI ID   WP_007497487.1    Uniprot ID   A0A9X0KBN2
Organism   Bacillus altitudinis strain NJ-M2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 840437..851549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKO65_RS04145 (AKO65_04145) gyrA 840462..842966 (-) 2505 WP_046526899.1 DNA gyrase subunit A -
  AKO65_RS04150 (AKO65_04150) gyrB 843200..845116 (-) 1917 WP_025206585.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AKO65_RS04155 (AKO65_04155) remB 845174..845419 (-) 246 WP_008360920.1 extracellular matrix regulator RemB -
  AKO65_RS04160 (AKO65_04160) recF 845437..846549 (-) 1113 WP_007497487.1 DNA replication/repair protein RecF Machinery gene
  AKO65_RS04165 (AKO65_04165) yaaA 846566..846781 (-) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  AKO65_RS04170 (AKO65_04170) dnaN 846932..848068 (-) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  AKO65_RS04175 (AKO65_04175) dnaA 848265..849605 (-) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  AKO65_RS04180 (AKO65_04180) rpmH 850226..850360 (+) 135 WP_008360908.1 50S ribosomal protein L34 -
  AKO65_RS04185 (AKO65_04185) rnpA 850439..850798 (+) 360 WP_035390150.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42574.65 Da        Isoelectric Point: 7.1297

>NTDB_id=153417 AKO65_RS04160 WP_007497487.1 845437..846549(-) (recF) [Bacillus altitudinis strain NJ-M2]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=153417 AKO65_RS04160 WP_007497487.1 845437..846549(-) (recF) [Bacillus altitudinis strain NJ-M2]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGCCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTTGTCACCACTACGAGTGT
TGAAGGCATCGACCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.198

99.73

0.83

Multiple sequence alignment