Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CDIF28196_RS03780 Genome accession   NZ_CP012320
Coordinates   743436..744143 (+) Length   235 a.a.
NCBI ID   WP_009888460.1    Uniprot ID   A0A9Q8EBL8
Organism   Clostridioides difficile strain DSM 28196     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 738436..749143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDIF28196_RS03750 (CDIF28196_00740) cdd1 739076..739321 (+) 246 WP_009888450.1 protein Cdd1 -
  CDIF28196_RS03755 (CDIF28196_00741) - 739538..739807 (-) 270 WP_009888452.1 DUF3795 domain-containing protein -
  CDIF28196_RS03760 (CDIF28196_00742) - 740019..740321 (-) 303 WP_009888454.1 hypothetical protein -
  CDIF28196_RS03765 (CDIF28196_00743) - 740841..741578 (-) 738 WP_003439186.1 ABC transporter permease -
  CDIF28196_RS03770 (CDIF28196_00744) - 741590..742351 (-) 762 WP_009888457.1 ABC transporter permease -
  CDIF28196_RS03775 (CDIF28196_00745) - 742351..743274 (-) 924 WP_012816028.1 ABC transporter ATP-binding protein -
  CDIF28196_RS03780 (CDIF28196_00746) scnR 743436..744143 (+) 708 WP_009888460.1 response regulator transcription factor Regulator
  CDIF28196_RS03785 (CDIF28196_00747) - 744188..745594 (+) 1407 WP_009892732.1 sensor histidine kinase -
  CDIF28196_RS03790 (CDIF28196_00748) - 747183..747572 (+) 390 WP_003426867.1 BlaI/MecI/CopY family transcriptional regulator -
  CDIF28196_RS03795 (CDIF28196_00749) - 748317..748787 (+) 471 WP_009888463.1 VOC family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26716.17 Da        Isoelectric Point: 6.1467

>NTDB_id=153345 CDIF28196_RS03780 WP_009888460.1 743436..744143(+) (scnR) [Clostridioides difficile strain DSM 28196]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=153345 CDIF28196_RS03780 WP_009888460.1 743436..744143(+) (scnR) [Clostridioides difficile strain DSM 28196]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTAAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAAGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTCTCTATTATGAGAAAAATTAGAGAGACATCTAAGATACCA
GTTATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGATTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-232)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

48.918

98.298

0.481
  micA Streptococcus pneumoniae Cp1015

40

100

0.4
  vicR Streptococcus mutans UA159

38.362

98.723

0.379

Multiple sequence alignment