Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AKK42_RS16135 Genome accession   NZ_CP012300
Coordinates   3283787..3284383 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain HKUOPLC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3278787..3289383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKK42_RS16120 (AKK42_16125) helD 3278998..3281052 (-) 2055 WP_004201438.1 DNA helicase IV -
  AKK42_RS16125 (AKK42_16130) - 3281177..3281623 (+) 447 WP_004201437.1 YccF domain-containing protein -
  AKK42_RS16130 (AKK42_16135) yccS 3281641..3283776 (+) 2136 WP_004201435.1 YccS family putative transporter -
  AKK42_RS16135 (AKK42_16140) sxy/tfoX 3283787..3284383 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  AKK42_RS26910 - 3284401..3284706 (-) 306 WP_157737552.1 hypothetical protein -
  AKK42_RS16140 (AKK42_16145) sulA 3284732..3285241 (+) 510 WP_053810586.1 SOS-induced cell division inhibitor SulA -
  AKK42_RS16145 (AKK42_16150) ompA 3285594..3286664 (+) 1071 WP_002898408.1 porin OmpA -
  AKK42_RS16150 (AKK42_16155) matP 3286859..3287311 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AKK42_RS16155 (AKK42_16160) - 3287497..3289254 (+) 1758 WP_053810587.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=153301 AKK42_RS16135 WP_004201433.1 3283787..3284383(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain HKUOPLC]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=153301 AKK42_RS16135 WP_004201433.1 3283787..3284383(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain HKUOPLC]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment