Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   A5478_RS13945 Genome accession   NZ_CP015342
Coordinates   3128068..3129318 (+) Length   416 a.a.
NCBI ID   WP_027220037.1    Uniprot ID   -
Organism   Legionella pneumophila strain D-7632     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3123068..3134318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5478_RS13910 (A5478_13910) - 3123377..3123676 (-) 300 WP_027220031.1 ArsR/SmtB family transcription factor -
  A5478_RS13915 (A5478_13915) - 3123929..3124273 (-) 345 WP_027220032.1 hypothetical protein -
  A5478_RS13920 (A5478_13920) - 3124390..3125019 (+) 630 WP_027220033.1 trimeric intracellular cation channel family protein -
  A5478_RS13925 (A5478_13925) - 3125229..3125723 (-) 495 WP_027220034.1 peptidylprolyl isomerase -
  A5478_RS13930 (A5478_13930) tgt 3125750..3126901 (-) 1152 WP_027220035.1 tRNA guanosine(34) transglycosylase Tgt -
  A5478_RS13935 (A5478_13935) - 3126963..3127454 (-) 492 WP_027220036.1 disulfide bond formation protein B -
  A5478_RS13940 (A5478_13940) - 3127451..3127879 (-) 429 WP_014844813.1 c-type cytochrome -
  A5478_RS13945 (A5478_13945) cqsA 3128068..3129318 (+) 1251 WP_027220037.1 quorum-sensing autoinducer LAI-1 synthase LqsA Regulator
  A5478_RS13950 (A5478_13950) - 3129400..3130425 (-) 1026 WP_010948430.1 response regulator -
  A5478_RS13955 (A5478_13955) - 3130706..3131269 (+) 564 WP_027220038.1 HdeD family acid-resistance protein -
  A5478_RS13960 (A5478_13960) - 3131357..3132646 (-) 1290 WP_010948432.1 sensor histidine kinase -
  A5478_RS13965 (A5478_13965) - 3132834..3133040 (+) 207 WP_032829284.1 hypothetical protein -
  A5478_RS13970 (A5478_13970) hemC 3133037..3133966 (+) 930 WP_027224456.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46079.60 Da        Isoelectric Point: 8.9810

>NTDB_id=153272 A5478_RS13945 WP_027220037.1 3128068..3129318(+) (cqsA) [Legionella pneumophila strain D-7632]
MSNTEYQTIDNETQYINGKEKHQNHAYPEYINHSMEKYYEGRVNKSWQGKHILKGKTPTANSLIFSSNDYLNISQHPQLI
KAQIAAMQKYGNGQMQSAVFLNNSSFLLSQCEKKFSSFLNYSAALLTQSGWSANVGLIQTLAKYNTPVYLDFYAHMSFWS
GVKAARAKPIPFLHNSVDSLKKRIEHHGPGIIAVDSIYSTLGTISPLADYADIARKFKCLLIVDESHSLGTHGSQGKGMV
AKLGLSSQIDIITASLAKALSGRGGIITGDRQLIEYIRYSSLPSIFSSALMPHDLAGFSASLEIITQEEWRRAKLQTNAD
FLREALSCEGINIGSSGSQIVPLVTGSEANTLWLRDELEKEDLFGAVFCSPATPKNKCLIRLSISAHHEKSDLLRVIECL
AKLARKRPDIPLFKGN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=153272 A5478_RS13945 WP_027220037.1 3128068..3129318(+) (cqsA) [Legionella pneumophila strain D-7632]
ATGAGCAATACAGAATACCAAACAATTGATAACGAGACTCAATATATCAATGGAAAAGAAAAACATCAAAACCATGCTTA
TCCTGAGTATATCAATCATTCCATGGAAAAATATTACGAGGGGCGAGTCAATAAATCCTGGCAAGGGAAACACATACTTA
AAGGCAAAACCCCGACTGCAAATTCACTGATTTTTTCGAGCAATGATTATTTAAACATCAGTCAACATCCGCAATTAATT
AAAGCGCAAATTGCTGCGATGCAAAAATATGGTAATGGTCAAATGCAATCCGCTGTATTTTTAAATAACAGCTCTTTTTT
GCTCAGCCAATGTGAAAAGAAATTCAGTTCCTTTTTAAATTATTCTGCGGCCCTGCTCACTCAATCAGGCTGGAGTGCTA
ACGTTGGTCTCATACAAACCCTGGCCAAGTACAATACACCAGTGTATCTGGATTTTTATGCCCATATGTCTTTTTGGTCT
GGTGTAAAAGCAGCCAGAGCCAAACCTATACCGTTTCTACATAATTCAGTCGATTCACTAAAAAAACGAATTGAACACCA
TGGACCAGGAATAATTGCAGTAGATTCTATTTATAGTACGCTGGGTACGATTAGTCCATTGGCTGACTATGCTGACATTG
CAAGAAAATTCAAATGTTTACTCATCGTCGATGAATCTCATTCATTAGGTACGCATGGTTCGCAAGGCAAGGGAATGGTG
GCTAAACTGGGATTATCAAGCCAAATAGACATCATAACAGCAAGCCTGGCTAAAGCCTTATCAGGACGTGGAGGCATCAT
TACAGGAGATAGGCAACTTATAGAATATATCAGATATTCATCTCTGCCTTCTATTTTTAGTTCTGCTTTAATGCCTCATG
ATTTAGCAGGATTTAGCGCATCATTAGAAATTATTACTCAAGAAGAATGGAGAAGAGCAAAATTACAAACCAATGCTGAT
TTTTTACGAGAAGCCTTATCATGCGAAGGAATTAATATAGGAAGTAGTGGCTCTCAAATAGTCCCTTTAGTTACAGGCAG
CGAGGCTAACACGCTTTGGTTAAGGGATGAGTTAGAAAAAGAAGACCTCTTTGGAGCCGTGTTCTGTTCACCCGCCACTC
CCAAAAATAAATGCCTGATTCGTTTATCCATCAGTGCGCATCACGAAAAATCGGACTTGCTCAGAGTGATTGAGTGCCTG
GCCAAACTTGCAAGAAAAAGACCCGATATTCCTTTGTTTAAGGGTAATTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(63-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

45.43

89.423

0.406