Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ADU73_RS08845 Genome accession   NZ_CP012294
Coordinates   1875007..1876695 (+) Length   562 a.a.
NCBI ID   WP_062913402.1    Uniprot ID   -
Organism   Pediococcus damnosus strain TMW 2.1536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1870007..1881695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADU73_RS08815 (ADU73_1720) folD 1870314..1871177 (+) 864 WP_046872141.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  ADU73_RS08820 (ADU73_1721) xseA 1871170..1872522 (+) 1353 WP_046872142.1 exodeoxyribonuclease VII large subunit -
  ADU73_RS08825 (ADU73_1722) - 1872515..1872781 (+) 267 WP_046872143.1 exodeoxyribonuclease VII small subunit -
  ADU73_RS08830 (ADU73_1723) - 1872774..1873676 (+) 903 WP_046872144.1 polyprenyl synthetase family protein -
  ADU73_RS08835 (ADU73_1724) - 1873673..1874500 (+) 828 WP_056986361.1 TlyA family RNA methyltransferase -
  ADU73_RS08840 (ADU73_1725) - 1874517..1874972 (+) 456 WP_046872146.1 arginine repressor -
  ADU73_RS08845 (ADU73_1726) recN 1875007..1876695 (+) 1689 WP_062913402.1 DNA repair protein RecN Machinery gene
  ADU73_RS08850 (ADU73_1727) - 1876838..1878031 (+) 1194 WP_081113886.1 betaine/proline/choline family ABC transporter ATP-binding protein -
  ADU73_RS08855 (ADU73_1728) - 1878028..1878663 (+) 636 WP_046872149.1 ABC transporter permease -
  ADU73_RS08860 (ADU73_1729) - 1878676..1879611 (+) 936 WP_046872150.1 osmoprotectant ABC transporter substrate-binding protein -
  ADU73_RS08865 (ADU73_1730) - 1879614..1880285 (+) 672 WP_046872151.1 ABC transporter permease -
  ADU73_RS08870 (ADU73_1731) - 1880287..1880601 (-) 315 WP_145930500.1 hypothetical protein -
  ADU73_RS08875 (ADU73_1732) gmk 1880782..1881396 (+) 615 WP_046872153.1 guanylate kinase -
  ADU73_RS08880 (ADU73_1733) rpoZ 1881398..1881607 (+) 210 WP_046872154.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63261.78 Da        Isoelectric Point: 5.1976

>NTDB_id=153265 ADU73_RS08845 WP_062913402.1 1875007..1876695(+) (recN) [Pediococcus damnosus strain TMW 2.1536]
MLQELVIRNFAIIEKLNIEFNSGMTVLTGETGAGKSIIIDAVGLLAGGRGSTDFIRKGAKKTVLQGMFSLSKNSETLELL
DQYGIDHADPTLILQREIQASGRNVCRINGSLVNTTILKQIGETLIDIHGQNEHQELMQADKHLGMLDEYARVEVQPLLK
RYQTYFERYQTLKKKFDQKKAHEKEWVQRVDMLKFQVKEIEDANLQAGEEEQLNSEKEHLENFQKISTTLQAAQTVLESS
DETSGAIDSTGEAMNGLREIEELDDNYKSISETISSAYYQLQDAASEISSELDGMEWDEGRLDQIEKRLEEIYQLKRKYG
DTFEQILSYDDKVSTELHNMIDLESDEGQMGTQLGDLKTKLDKLAKQLTLARQKAAKQLKKDVHAQLKQLYMDKTEFEVH
FDTSQPVKFKSTGVDSVEFYLRTNPGEKMSSLTRIASGGELSRIMLALKTIFAESQGVTSIIFDEVDTGVSGRVAQAIAE
KIKLIASYSQVLCITHLPQVAAEADHQFFVAKVVKDGRTETKLTYLNKDGRVQELARMLAGSTVTKLSIQHAKELLKMAH
RS

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=153265 ADU73_RS08845 WP_062913402.1 1875007..1876695(+) (recN) [Pediococcus damnosus strain TMW 2.1536]
ATGTTACAAGAATTGGTAATTCGAAATTTTGCTATTATTGAGAAACTAAACATTGAATTTAATTCAGGGATGACGGTTTT
AACTGGTGAAACGGGTGCTGGAAAATCGATTATCATTGATGCTGTTGGTTTATTGGCCGGTGGAAGAGGGTCTACTGATT
TTATTCGCAAAGGAGCTAAAAAAACTGTTTTACAAGGGATGTTTAGTTTAAGCAAAAATAGCGAAACACTAGAATTATTA
GATCAATATGGAATTGATCATGCCGATCCAACCCTCATTTTGCAACGCGAGATTCAAGCGAGTGGCCGAAACGTTTGCCG
AATTAATGGATCATTAGTAAATACCACAATTTTAAAACAAATTGGTGAAACTTTGATCGATATTCATGGGCAAAATGAGC
ATCAAGAATTAATGCAAGCAGATAAACATTTGGGAATGCTTGATGAATATGCGCGTGTTGAAGTTCAGCCTCTGTTAAAA
CGTTATCAAACTTATTTTGAACGTTATCAAACTCTAAAAAAGAAATTCGACCAAAAAAAAGCTCATGAAAAAGAGTGGGT
TCAACGAGTGGATATGCTTAAGTTTCAGGTTAAGGAAATAGAAGACGCTAATCTTCAAGCTGGAGAAGAAGAACAGTTAA
ATTCCGAAAAAGAACATTTAGAAAATTTCCAAAAAATTAGCACCACTCTTCAAGCGGCTCAGACTGTTTTAGAGAGCAGT
GATGAGACTTCTGGGGCAATTGATAGTACGGGCGAGGCAATGAATGGTCTACGCGAGATTGAGGAGTTAGATGACAATTA
TAAATCAATTTCAGAAACGATTTCTTCAGCTTATTATCAACTGCAAGATGCTGCCAGTGAAATTAGTAGTGAATTAGACG
GTATGGAGTGGGATGAAGGCAGACTAGATCAAATTGAAAAACGTTTAGAGGAAATTTATCAATTAAAACGAAAATACGGT
GATACCTTTGAACAAATTTTGAGTTATGATGATAAAGTTTCGACAGAATTACATAATATGATCGATTTAGAATCAGACGA
AGGACAAATGGGAACCCAACTTGGTGATTTGAAAACTAAGTTGGATAAGCTTGCCAAGCAATTAACTTTGGCACGTCAAA
AGGCAGCCAAACAGTTAAAAAAAGATGTTCATGCACAACTAAAACAGTTGTATATGGATAAAACAGAGTTTGAAGTTCAC
TTTGATACATCGCAGCCCGTAAAATTTAAATCAACAGGTGTCGATTCAGTGGAGTTTTATTTGCGAACCAATCCCGGTGA
AAAAATGAGTTCACTTACGCGGATTGCGTCCGGTGGGGAACTTTCTCGGATTATGTTAGCATTAAAAACAATTTTTGCGG
AGTCGCAGGGTGTAACTAGTATTATATTTGATGAGGTGGATACGGGAGTTAGTGGCCGTGTTGCTCAGGCAATTGCTGAA
AAGATCAAATTAATTGCCAGTTATTCTCAGGTACTATGTATTACGCATTTACCGCAGGTTGCCGCCGAAGCAGATCATCA
ATTTTTTGTGGCTAAGGTAGTTAAAGATGGACGGACAGAAACTAAATTAACTTATTTAAATAAAGATGGTCGGGTACAGG
AACTGGCCAGAATGCTTGCTGGAAGTACCGTTACCAAATTGAGTATTCAACATGCGAAAGAACTCCTTAAGATGGCACAT
CGTTCTTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.15

100

0.486

Multiple sequence alignment