Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ADU72_RS09325 Genome accession   NZ_CP012288
Coordinates   1981443..1983131 (+) Length   562 a.a.
NCBI ID   WP_062916759.1    Uniprot ID   -
Organism   Pediococcus damnosus strain TMW 2.1535     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1976443..1988131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADU72_RS09295 (ADU72_1989) folD 1976750..1977613 (+) 864 WP_046872141.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  ADU72_RS09300 (ADU72_1990) xseA 1977606..1978958 (+) 1353 WP_046872142.1 exodeoxyribonuclease VII large subunit -
  ADU72_RS09305 (ADU72_1991) - 1978951..1979217 (+) 267 WP_046872143.1 exodeoxyribonuclease VII small subunit -
  ADU72_RS09310 (ADU72_1992) - 1979210..1980112 (+) 903 WP_046872144.1 polyprenyl synthetase family protein -
  ADU72_RS09315 (ADU72_1993) - 1980109..1980936 (+) 828 WP_056986361.1 TlyA family RNA methyltransferase -
  ADU72_RS09320 (ADU72_1994) - 1980953..1981408 (+) 456 WP_046872146.1 arginine repressor -
  ADU72_RS09325 (ADU72_1995) recN 1981443..1983131 (+) 1689 WP_062916759.1 DNA repair protein RecN Machinery gene
  ADU72_RS09330 (ADU72_1996) - 1983274..1984467 (+) 1194 WP_081036088.1 betaine/proline/choline family ABC transporter ATP-binding protein -
  ADU72_RS09335 (ADU72_1997) - 1984464..1985099 (+) 636 WP_062904426.1 ABC transporter permease -
  ADU72_RS09340 (ADU72_1998) - 1985112..1986047 (+) 936 WP_046872150.1 osmoprotectant ABC transporter substrate-binding protein -
  ADU72_RS09345 (ADU72_1999) - 1986050..1986721 (+) 672 WP_046872151.1 ABC transporter permease -
  ADU72_RS09350 - 1986723..1987055 (-) 333 WP_046872152.1 hypothetical protein -
  ADU72_RS09355 (ADU72_2000) gmk 1987218..1987832 (+) 615 WP_046872153.1 guanylate kinase -
  ADU72_RS09360 (ADU72_2001) rpoZ 1987834..1988043 (+) 210 WP_046872154.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63243.76 Da        Isoelectric Point: 5.1274

>NTDB_id=153239 ADU72_RS09325 WP_062916759.1 1981443..1983131(+) (recN) [Pediococcus damnosus strain TMW 2.1535]
MLQELVIRNFAIIEKLNIEFNSGMTVLTGETGAGKSIIIDAVGLLAGGRGSTDFIRKGAKKTVLQGMFSLSKNSETLELL
DQYGIDHADPTLILQREIQASGRNVCRINGSLVNTTILKQIGETLIDIHGQNEHQELMQADKHLGMLDEYARVEVQPLLK
RYQTYFERYQTLKKKFDQKKAHEKEWVQRVDMLKFQVKEIEDANLQAGEEEQLNSEKEHLENFQKISTTLQAAQTVLESS
DETSGAIDSTGEAMNGLREIEELDDNYKSISETISSAYYQLQDAASEISSELDGMEWDEGRLDQIEKRLEEIYQLKRKYG
DTVEQILSYDDKVSTELHNMIDLESDEGQMGTQLGDLKTKLDKLAKQLTLARQKAAKQLKKDVHAQLKQLYMDKTEFEVH
FDTSQPVKFKSTGVDSVEFYLRTNPGEKMSSLTRIASGGELSRIMLALKTIFAESQGVTSIIFDEVDTGVSGRVAQAIAE
KIKLIASYSQVLCITHLPQVAAEADHQFFVAKVVKDGRTETKLTYLNKDGWVQELARMLAGSTVTKLSIQHAKELLKMAH
RS

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=153239 ADU72_RS09325 WP_062916759.1 1981443..1983131(+) (recN) [Pediococcus damnosus strain TMW 2.1535]
ATGTTACAAGAATTGGTAATTCGAAATTTTGCTATTATTGAGAAACTAAACATTGAATTTAATTCAGGGATGACGGTTTT
AACTGGTGAAACGGGTGCTGGAAAATCGATTATCATTGATGCTGTTGGTTTATTGGCCGGTGGAAGAGGGTCTACTGATT
TTATTCGCAAAGGAGCTAAAAAAACTGTTTTACAAGGGATGTTTAGTTTAAGCAAAAATAGCGAAACACTAGAATTATTA
GATCAATATGGAATTGATCATGCCGATCCAACCCTCATTTTGCAACGCGAGATTCAAGCGAGTGGCCGAAACGTTTGCCG
AATTAATGGATCATTAGTAAATACCACAATTTTAAAACAAATTGGTGAAACTTTGATCGATATTCATGGGCAAAATGAGC
ATCAAGAATTAATGCAAGCAGATAAACATTTGGGAATGCTTGATGAATATGCGCGTGTTGAAGTTCAGCCTCTGTTAAAA
CGTTATCAAACTTATTTTGAACGTTATCAAACTCTAAAAAAGAAATTCGACCAAAAAAAAGCTCATGAAAAAGAGTGGGT
TCAACGAGTGGATATGCTTAAGTTTCAGGTTAAGGAAATAGAAGACGCTAATCTTCAAGCTGGAGAAGAAGAACAGTTAA
ATTCCGAAAAAGAACATTTAGAAAATTTCCAAAAAATTAGCACCACTCTTCAAGCGGCTCAGACTGTTTTAGAGAGCAGT
GATGAGACTTCTGGGGCAATTGATAGTACGGGCGAGGCAATGAATGGTCTACGCGAGATTGAGGAGTTAGATGACAATTA
TAAATCAATTTCAGAAACGATTTCTTCAGCTTATTATCAACTGCAAGATGCTGCCAGTGAAATTAGTAGTGAATTAGACG
GTATGGAGTGGGATGAAGGCAGACTAGATCAAATTGAAAAACGTTTAGAGGAAATTTATCAATTAAAACGAAAATACGGT
GATACCGTTGAACAAATTTTGAGTTATGATGATAAAGTTTCGACAGAATTACATAATATGATCGATTTAGAATCAGACGA
AGGACAAATGGGAACCCAACTTGGTGATTTGAAAACTAAGTTGGATAAGCTTGCCAAGCAATTAACTTTGGCACGTCAAA
AGGCAGCCAAACAGTTAAAAAAAGATGTTCATGCACAACTAAAACAGTTGTATATGGATAAAACAGAGTTTGAAGTTCAC
TTTGATACATCGCAGCCCGTAAAATTTAAATCAACAGGTGTCGATTCAGTGGAGTTTTATTTGCGAACCAATCCCGGTGA
AAAAATGAGTTCACTTACGCGGATTGCGTCCGGTGGGGAACTTTCTCGGATTATGTTAGCATTAAAAACAATTTTTGCGG
AGTCGCAGGGTGTAACTAGTATTATATTTGATGAGGTGGATACGGGAGTTAGTGGCCGTGTTGCTCAGGCAATTGCTGAA
AAGATCAAATTAATTGCCAGTTATTCTCAGGTACTATGTATTACGCATTTACCGCAGGTTGCCGCCGAAGCAGATCATCA
ATTTTTTGTGGCTAAGGTAGTTAAAGATGGACGGACAGAAACTAAATTAACTTATTTAAATAAAGATGGTTGGGTACAGG
AACTGGCCAGAATGCTTGCTGGAAGTACCGTTACCAAATTGAGTATTCAACATGCGAAAGAACTCCTTAAGATGGCACAT
CGTTCTTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.323

100

0.488

Multiple sequence alignment