Detailed information NTG0153232

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A5478_RS06330
• Genome accession: NZ_CP015342
• Coordinates: 1395015..1396040 (+)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila strain D-7632
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1390015..1401040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A5478_RS06300 (A5478_06300)	-	1390447..1390764 (+)	318	WP_014843747.1	DUF2845 domain-containing protein	-
A5478_RS06305 (A5478_06305)	-	1390801..1391172 (+)	372	WP_014843748.1	protease inhibitor I42 family protein	-
A5478_RS06310 (A5478_06310)	-	1391229..1392944 (-)	1716	WP_027224097.1	NAD-dependent malic enzyme	-
A5478_RS06315 (A5478_06315)	-	1393024..1393407 (+)	384	WP_014843750.1	hypothetical protein	-
A5478_RS06320 (A5478_06320)	surE	1393410..1394168 (+)	759	WP_014841465.1	5'/3'-nucleotidase SurE	-
A5478_RS06325 (A5478_06325)	-	1394187..1394930 (+)	744	WP_027224096.1	peptidoglycan DD-metalloendopeptidase family protein	-
A5478_RS06330 (A5478_06330)	rpoS	1395015..1396040 (+)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
A5478_RS06335 (A5478_06335)	hmgA	1396143..1397393 (-)	1251	WP_014843752.1	homogentisate 1,2-dioxygenase	-
A5478_RS06340 (A5478_06340)	-	1397540..1398283 (+)	744	WP_027224095.1	YebC/PmpR family DNA-binding transcriptional regulator	-
A5478_RS06345 (A5478_06345)	ruvC	1398283..1398807 (+)	525	WP_027224094.1	crossover junction endodeoxyribonuclease RuvC	-
A5478_RS06350 (A5478_06350)	ruvA	1398804..1399403 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
A5478_RS06355 (A5478_06355)	-	1399455..1399775 (+)	321	WP_011946343.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=153232 A5478_RS06330 WP_011213596.1 1395015..1396040(+) (rpoS) [Legionella pneumophila strain D-7632]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=153232 A5478_RS06330 WP_011213596.1 1395015..1396040(+) (rpoS) [Legionella pneumophila strain D-7632]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGCT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGCTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAACTTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGATGTTGGTAAGGAAATTGATTTGACCCGTGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548