Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V471_RS08700 Genome accession   NZ_CP015283
Coordinates   1846058..1848259 (-) Length   733 a.a.
NCBI ID   WP_084871408.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1841058..1853259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS08675 (V471_08535) - 1842001..1842762 (-) 762 WP_084871407.1 hypothetical protein -
  V471_RS08680 (V471_08540) nth 1842890..1843534 (-) 645 WP_002884001.1 endonuclease III -
  V471_RS08685 (V471_08545) - 1843534..1844232 (-) 699 WP_004182658.1 DnaD domain-containing protein -
  V471_RS08690 (V471_08550) metA 1844304..1845248 (-) 945 WP_070575083.1 homoserine O-acetyltransferase MetA -
  V471_RS08695 (V471_08555) - 1845421..1845939 (-) 519 WP_070439027.1 adenine phosphoribosyltransferase -
  V471_RS08700 (V471_08560) recJ 1846058..1848259 (-) 2202 WP_084871408.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V471_RS08705 (V471_08565) - 1848565..1848969 (-) 405 WP_045001800.1 GNAT family N-acetyltransferase -
  V471_RS08710 (V471_08570) - 1848971..1849681 (-) 711 WP_014633247.1 class I SAM-dependent methyltransferase -
  V471_RS08715 (V471_08575) - 1849693..1850460 (-) 768 WP_014633248.1 SDR family NAD(P)-dependent oxidoreductase -
  V471_RS08720 (V471_08580) rnz 1850460..1851389 (-) 930 WP_045001803.1 ribonuclease Z -
  V471_RS08725 (V471_08585) - 1851421..1852062 (-) 642 WP_045001806.1 cystathionine beta-lyase -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82156.42 Da        Isoelectric Point: 4.3383

>NTDB_id=153195 V471_RS08700 WP_084871408.1 1846058..1848259(-) (recJ) [Streptococcus salivarius strain ATCC 25975]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGVTTAEALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSEILCHYVYDNDIDTTAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHNITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGNLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMALPEGVPMVEEAADTEPAVVLNTLPESATELKEWFDGKEFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFEELDFVAIDNGVMTVNKEAEKREIEDSQIFQDLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=153195 V471_RS08700 WP_084871408.1 1846058..1848259(-) (recJ) [Streptococcus salivarius strain ATCC 25975]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
ACTGGCAGAAACAGCAGCCAAGATTGCTTATGAACGTGGCGTGACGACAGCAGAAGCCCTTGAAGACTTTCTTAAGGCTG
ATTTATCACATCTTCATGACCCTTATCTTCTTCATGATATGGACAAGGCAGTGGCTAGAATTCGTCAGGCCATTGAAAAT
TATGAGCAAATCTTAGTCTATGGAGATTATGATGCGGATGGGATGACGTCAGCATCGATTGTCAAGGAAGCTCTTGAAAT
GATGGGCGCTGAAGCTCGAGTCTATTTGCCTAACCGTTTTACAGATGGTTATGGGCCAAACGAAAGTGTCTATAAGTATT
TCATTGAGCAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGGGTAGCGGGTAATGAGGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCACCATAGTATGCCGGCACAACTTCCAGATGCCTACGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGATGTGGTGTAGCTTTCAAATTGGCAACGGCCCTCCTTG
AAACTATTCCTACAGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCCGATATGGTTAGCCTTACGGATGAAAATCGT
ATTATGGTCAAGGTCGGGCTGGAAATTCTCAAGACTACTGAGCGTATAGGGCTTCAAGAATTGCTCCGCATTTCAGATGT
GGACCCAACAACGATTTCCGAAGAAACGGTAGGTTTCAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAATTGCTGACCGGATTTGACGATGAGGAAGCTCAAGCCATTGCTCTGGAAATCAATGCCAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGACGAAGCTATGACCATGGTAGACTTGGACAAACCAGTTCAGGTTTT
AGCCAAGGAAGGTTGGCATCCTGGCGTTCTAGGTATTGTGGCGGGGCGCATCATGGAACAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGCTTGGCTAAGGGATCAGCCCGTAGTTTGGAATCTATTAATATCTTCCATGCTCTTGATGAC
CACCGAGATATCTTTACTGCATTTGGAGGACATGCTGGAGCGGCTGGGATGACTCTTCCGGAGGAAAATCTTGGTCAACT
ATCAGAAATCTTGTGTCATTATGTTTATGATAATGACATTGACACGACTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TCCAACTCAGCGAGCTTAGCTTGGATACCATTAAGAGCCTTGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATAATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGGGCCCATCTTAAGTTTAAGGTTAA
GCAAGGTAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTAATCTGCTTCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTCAATGTTTGGAATGGTCAGACAACGCTACAGCTCATGCTAGAAGATGCACGTGTGGAT
GGTGTTCAATTATTTGATTTCCGCTCAAAAAATATGGCACTGCCTGAAGGCGTACCAATGGTAGAAGAAGCAGCAGACAC
CGAGCCTGCAGTTGTCCTCAACACCTTACCTGAATCAGCGACAGAATTAAAAGAGTGGTTTGATGGTAAAGAATTCCAAG
CTATCTATTTTAAAAATAGCATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTACCAATTCCCAGAATTCGATGTTCGCTATAAATTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTCCTGATTAAGATGATTCAAATCTTTGAGGAATTGGATTTTGTGGCTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAGAAACGTGAGATTGAGGACAGTCAAATTTTCCAAGATCTGAAACGACTAGTTAAGTTCCAAGAACTCATGGCT
CTGGGAACACCACAGGAAATTTATGATTGGCTGTATAAGTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(585-731)

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

68.342

100

0.686
  recJ Bacillus subtilis subsp. subtilis str. 168

38.186

100

0.408