Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   V471_RS07850 Genome accession   NZ_CP015283
Coordinates   1675000..1676070 (-) Length   356 a.a.
NCBI ID   WP_045001736.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1670000..1681070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS07835 (V471_07725) pstB 1670723..1671481 (+) 759 WP_070656235.1 phosphate ABC transporter ATP-binding protein PstB -
  V471_RS07840 (V471_07730) phoU 1671510..1672163 (+) 654 WP_021146873.1 phosphate signaling complex protein PhoU -
  V471_RS07845 (V471_07735) - 1672297..1674837 (+) 2541 WP_084871373.1 M1 family metallopeptidase -
  V471_RS07850 (V471_07740) xerS 1675000..1676070 (-) 1071 WP_045001736.1 tyrosine recombinase XerS Machinery gene
  V471_RS07855 (V471_07745) - 1676367..1677356 (-) 990 WP_084871374.1 lipoate--protein ligase -
  V471_RS07860 - 1677588..1678607 (+) 1020 WP_231910676.1 hypothetical protein -
  V471_RS07865 (V471_07760) glgP 1678716..1680977 (-) 2262 WP_084871375.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41411.50 Da        Isoelectric Point: 9.3734

>NTDB_id=153187 V471_RS07850 WP_045001736.1 1675000..1676070(-) (xerS) [Streptococcus salivarius strain ATCC 25975]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIESGISDADDIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLETYLSIRDKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=153187 V471_RS07850 WP_045001736.1 1675000..1676070(-) (xerS) [Streptococcus salivarius strain ATCC 25975]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAGGAATACAAATCTCTAATGCCCTGGTTTGTTCTGGAGTATTATCAGTC
TAAACTATCAGTACCGTATTCTTTTACGACCTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
AGTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTGACATCAAAACCTTGGAAAATCTAACTAAAAAAGATATGGAG
TCATTTGTGCTTTATCTACGTGAACGTCCATCTTTGAATACCTATTCCAAGAAACAGGGTGTCTCTCAAACGACCATTAA
TCGTACACTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACCGAGGAGGTCGAGGGTCCTGACGGTGAGCCGTATTTCT
ATCGTAACGTTATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCACGTGCTGAGAATATCAAACAGAAA
CTCTTTCTAGGCGATGAAACCATGGAATTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGCGCTAA
ATCATCGTTTTATAAGAATAAAGAACGTGATTTAGCTATCATTGCCTTGCTGCTGGCTTCAGGTGTTCGACTTTCTGAGG
CTGTTAATCTGGACCTTAAAGATATCAATCTAAAAATGATGGTCATCGACGTCACTCGAAAAGGTGGCAAACGGGACTCA
GTTAATGTAGCAAGTTTTGCAAAGCCCTATCTTGAAACTTATCTCAGTATACGTGATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCCCTCTTTTTAACGGAATATCGAGGGGTTCCAAACCGTATTGATGCTTCAAGTATCGAAAAGATGGTTGCCA
AATATTCTCAGGATTTCAAAATTCGTGTGACTCCCCACAAGCTTCGACATACTCTGGCAACACGCCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTGAGTCATCAACTTGGCCATGCTTCCACTCAGGTTACTGATCTATATACGCATATTGTTAATGA
TGAACAAAAAAATGCTCTAGACAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(183-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837