Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V471_RS03010 Genome accession   NZ_CP015283
Coordinates   571290..572063 (+) Length   257 a.a.
NCBI ID   WP_002886288.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 566290..577063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS02990 (V471_02960) - 567595..568560 (+) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  V471_RS02995 (V471_02965) - 568668..569054 (-) 387 WP_084871091.1 transposase -
  V471_RS03000 (V471_02970) - 569074..569835 (-) 762 WP_049529073.1 IS110 family transposase -
  V471_RS03005 (V471_02975) - 570128..571303 (+) 1176 WP_002886287.1 pyridoxal phosphate-dependent aminotransferase -
  V471_RS03010 (V471_02980) recO 571290..572063 (+) 774 WP_002886288.1 DNA repair protein RecO Machinery gene
  V471_RS03015 (V471_02985) plsX 572275..573279 (+) 1005 WP_002886289.1 phosphate acyltransferase PlsX -
  V471_RS03020 (V471_02990) - 573279..573524 (+) 246 WP_002886291.1 phosphopantetheine-binding protein -
  V471_RS03025 (V471_02995) purC 573783..574490 (+) 708 WP_084871092.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29703.81 Da        Isoelectric Point: 5.0708

>NTDB_id=153132 V471_RS03010 WP_002886288.1 571290..572063(+) (recO) [Streptococcus salivarius strain ATCC 25975]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSHAESFKE
ITSDIFKLSYATYLAALTDAAIADGVADAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYAEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=153132 V471_RS03010 WP_002886288.1 571290..572063(+) (recO) [Streptococcus salivarius strain ATCC 25975]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTAGTTAAGATTTTTAC
CGAGCAAGCTGGGAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTAAGTGCTGTGATTCAACCTTTAACCA
TCGCTGAGTTCATGATGACTGTAAATGATGAGGGCTTATCTTTCATAGAGGATTATAGCCATGCAGAGTCCTTCAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTGCTCTGACGGATGCTGCTATTGCTGACGGTGTGGC
AGATGCACAATTATTTGCATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGTGTACGATTGAATTTTCACGAGTGTGTCTTTTGCCATCGTGTGGGGCTT
CCTTTTGATTTTTCGTATAAGTTCTCGGGGCTACTTTGTCCAAATCACTATGCAGAGGATGAAAGGCGTAGTCACTTGGA
TCCTAATGTACCTTATCTTTTAGATCGTTTTCAGGGGCTTTCTTTTGAGGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGACATTTTATTGATGACCTATATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.846

98.444

0.619