Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   V471_RS00170 Genome accession   NZ_CP015283
Coordinates   33411..35396 (-) Length   661 a.a.
NCBI ID   WP_084870974.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28411..40396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS00140 (V471_00140) rsmI 29630..30496 (-) 867 WP_084870971.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  V471_RS00145 (V471_00145) yabA 30499..30819 (-) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  V471_RS00150 (V471_00150) yaaT 30806..31612 (-) 807 WP_084870972.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  V471_RS00155 (V471_00155) - 31609..32484 (-) 876 WP_084870973.1 DNA polymerase III subunit delta' -
  V471_RS00160 (V471_00160) tmk 32493..33122 (-) 630 WP_070438794.1 dTMP kinase -
  V471_RS00170 (V471_00170) recP/tkt 33411..35396 (-) 1986 WP_084870974.1 transketolase Machinery gene
  V471_RS00175 (V471_00175) tpiA 35662..36420 (-) 759 WP_084870975.1 triose-phosphate isomerase -
  V471_RS00180 (V471_00180) tuf 36675..37871 (-) 1197 WP_002890213.1 elongation factor Tu -
  V471_RS00185 (V471_00185) ftsW 38108..39388 (-) 1281 WP_045002097.1 cell division peptidoglycan polymerase FtsW -
  V471_RS00190 (V471_00190) - 39689..40105 (-) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70832.48 Da        Isoelectric Point: 4.7323

>NTDB_id=153096 V471_RS00170 WP_084870974.1 33411..35396(-) (recP/tkt) [Streptococcus salivarius strain ATCC 25975]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVSMDDLKNFRQWGSKTPGHPEVDHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEAGIKFRGEAAENAWQTKFAEYE
AAYPELAAEYKVAFANEPVHVDLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQPDNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAEAGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=153096 V471_RS00170 WP_084870974.1 33411..35396(-) (recP/tkt) [Streptococcus salivarius strain ATCC 25975]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGACACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTACTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CTAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCAGGTCATGGTTCTGCTTTGCTTTATAGTCTCTTGCAC
CTTTCAGGCTATGATGTATCAATGGATGATTTGAAGAACTTCCGTCAATGGGGTTCTAAGACTCCGGGTCACCCTGAAGT
TGATCATACTGATGGTGTTGAAGCAACATCAGGTCCTCTTGGTCAAGGGATTGCTAATGCAGTAGGTATGGCAATGGCTG
AAGCACATTTGGCTGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCTCTCCATGGCGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCTAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTACTTCTTTACGA
TTCAAATGATATCTCACTTGATGGACCGACTTCAATGGCTTTCACTGAAGATGTTAAGGCTAAGTTTGAGGCTTATGGTT
GGCAACACATTCTTGTCAAAGATGGTAATGATTTGGAAGCTATCGCTAAAGCAATCGAAGAAGCTAAAGCTGAGACAGAT
AAACCATCTATCATCGAAGTTAAGACAATCATTGGTTACGGAGCTGAAGGACAAGGAACATCGGCTGTCCACGGTGCTCC
AATTGGTCAAGACGGTATTGATCACGCAAAAGGTGTTTACGGTTACGATGCACCAGCATTTACAGTTCCAGATGAAGTCG
CTCGTCGTTTCGAAGCTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
GCTGCTTATCCAGAATTGGCTGCTGAATACAAGGTTGCCTTTGCGAATGAACCTGTACACGTTGACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTGTCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCTGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAACCAGACAACTATGCTGGA
CGTAATATTTGGTTCGGTGTACGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGCGT
TTATGGTGGTACTTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCTCTTCAAAACTTGCCAGTAA
CTTATGTTATGACACACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCGTGGAAACGTGCCTTGGCTGA
GACTGAACGTCCAACAATGCTAGTTTTGACACGTCAAAACTTGCCAGTCCTTGATGGTACAGCTGAAAATGCCGAAGCTG
GTGTCAATAAAGGGGCTTACATCATCTCAGAAGCTAAAGGTGATCTTGATGGTATCATCATTGCGACAGGTTCTGAAGTG
AAATTGGCTCTTGATACTCAAGCGGCTCTTGAAGCTGAAGGAGTGCATGTCCGTGTTGTTTCAATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTTCTTCCAGCAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATATGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGATTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.839

99.546

0.566