Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NX99_RS06665 Genome accession   NZ_CP015282
Coordinates   1487723..1488496 (-) Length   257 a.a.
NCBI ID   WP_004181941.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 27945     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1482723..1493496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS06650 (NX99_06520) purC 1485297..1486004 (-) 708 WP_002886293.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  NX99_RS06655 (NX99_06525) - 1486263..1486508 (-) 246 WP_004181960.1 phosphopantetheine-binding protein -
  NX99_RS06660 (NX99_06530) plsX 1486508..1487512 (-) 1005 WP_084915158.1 phosphate acyltransferase PlsX -
  NX99_RS06665 (NX99_06535) recO 1487723..1488496 (-) 774 WP_004181941.1 DNA repair protein RecO Machinery gene
  NX99_RS06670 (NX99_06540) - 1488483..1489658 (-) 1176 WP_084915160.1 pyridoxal phosphate-dependent aminotransferase -
  NX99_RS06675 (NX99_06545) - 1489751..1490716 (-) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  NX99_RS06680 (NX99_06550) - 1491029..1492278 (+) 1250 Protein_1284 ISL3 family transposase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29709.82 Da        Isoelectric Point: 5.0672

>NTDB_id=153045 NX99_RS06665 WP_004181941.1 1487723..1488496(-) (recO) [Streptococcus salivarius strain ATCC 27945]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLASLTDAAIADGVADAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYAEDERRSHLNPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=153045 NX99_RS06665 WP_004181941.1 1487723..1488496(-) (recO) [Streptococcus salivarius strain ATCC 27945]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAACGATAAGCTAGTTAAGATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTAAGTGCTGTGATTCAACCTTTAACCA
TCGCTGAATTCATGATGACTGTAAATGATGAGGGCTTATCTTTCATAGAGGATTATAGCCAAGCAGAATCCTTTAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTTCTCTGACGGATGCTGCTATTGCTGACGGTGTGGC
AGATGCGCAATTATTTGCATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGTGTTCGCTTGAATTTTCATGAGTGTGTCTTTTGCCATCGTGTGGGCCTT
CCTTTTGATTTTTCGTATAAGTTCTCGGGGCTACTTTGTCCAAATCATTATGCAGAGGATGAAAGGCGTAGTCACTTAAA
TCCTAATGTACCTTATCTTTTAGATCGTTTTCAGGGGCTTTCTTTTGAGGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGACATTTTATTGATGACCTCTATGATAATTATGTTGGAATACATCTAAAAAGTAAGAAATTTATT
GATAATCTAAATTCTTGGGGCCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.846

98.444

0.619