Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AKG92_RS21585 Genome accession   NZ_CP012252
Coordinates   4640241..4640837 (+) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain HKUOPLA     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4635241..4645837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKG92_RS21565 (AKG92_21570) - 4635370..4637127 (-) 1758 WP_053810587.1 Lon protease family protein -
  AKG92_RS21570 (AKG92_21575) matP 4637313..4637765 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AKG92_RS21575 (AKG92_21580) ompA 4637960..4639030 (-) 1071 WP_002898408.1 porin OmpA -
  AKG92_RS21580 (AKG92_21585) sulA 4639383..4639892 (-) 510 WP_053810586.1 SOS-induced cell division inhibitor SulA -
  AKG92_RS26650 - 4639918..4640223 (+) 306 WP_157737552.1 hypothetical protein -
  AKG92_RS21585 (AKG92_21590) sxy/tfoX 4640241..4640837 (+) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  AKG92_RS21590 (AKG92_21595) yccS 4640848..4642983 (-) 2136 WP_004201435.1 YccS family putative transporter -
  AKG92_RS21595 (AKG92_21600) - 4643001..4643447 (-) 447 WP_004201437.1 YccF domain-containing protein -
  AKG92_RS21600 (AKG92_21605) helD 4643572..4645626 (+) 2055 WP_004201438.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=153034 AKG92_RS21585 WP_004201433.1 4640241..4640837(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain HKUOPLA]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=153034 AKG92_RS21585 WP_004201433.1 4640241..4640837(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain HKUOPLA]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment