Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   I51_RS23005 Genome accession   NZ_CP015244
Coordinates   4440161..4440676 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli O91 str. RM7190     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4435161..4445676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I51_RS22960 (I51_22070) csrA 4435748..4435933 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  I51_RS22990 (I51_22100) yqaB 4437391..4437957 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  I51_RS22995 (I51_22105) yqaA 4437954..4438382 (+) 429 WP_001287454.1 YqaA family protein -
  I51_RS23000 (I51_22110) gshA 4438455..4440011 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  I51_RS23005 (I51_22115) luxS 4440161..4440676 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  I51_RS23010 (I51_22120) emrB 4440740..4442278 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  I51_RS23015 (I51_22125) emrA 4442295..4443467 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  I51_RS23020 (I51_22130) emrR 4443594..4444124 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  I51_RS23025 (I51_22135) ygaH 4444215..4444550 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  I51_RS23030 (I51_22140) ygaZ 4444540..4445277 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=152972 I51_RS23005 WP_001130210.1 4440161..4440676(+) (luxS) [Escherichia coli O91 str. RM7190]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=152972 I51_RS23005 WP_001130210.1 4440161..4440676(+) (luxS) [Escherichia coli O91 str. RM7190]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737