Detailed information NTG0152969

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I51_RS22690
• Genome accession: NZ_CP015244
• Coordinates: 4381759..4382751 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O91 str. RM7190
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4376759..4387751

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I51_RS22660 (I51_21765)	ispD	4376820..4377530 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I51_RS22665 (I51_21770)	ispF	4377530..4378009 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I51_RS22670 (I51_21775)	truD	4378006..4379055 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
I51_RS22675 (I51_21780)	surE	4379036..4379797 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I51_RS22680 (I51_21785)	pcm	4379791..4380417 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I51_RS22685 (I51_21790)	nlpD	4380602..4381696 (+)	1095	WP_306218436.1	murein hydrolase activator NlpD	-
I51_RS22690 (I51_21795)	rpoS	4381759..4382751 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I51_RS22695 (I51_21800)	-	4382872..4383279 (-)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
I51_RS22700 (I51_21805)	-	4383426..4384019 (+)	594	WP_000767708.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
I51_RS22705 (I51_21810)	-	4384019..4385446 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
I51_RS22710 (I51_21815)	-	4385457..4385693 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
I51_RS22715 (I51_21820)	ygbN	4385732..4387096 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=152969 I51_RS22690 WP_000081550.1 4381759..4382751(+) (rpoS) [Escherichia coli O91 str. RM7190]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=152969 I51_RS22690 WP_000081550.1 4381759..4382751(+) (rpoS) [Escherichia coli O91 str. RM7190]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715