Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   AEI09_RS05275 Genome accession   NZ_CP012248
Coordinates   996685..997416 (+) Length   243 a.a.
NCBI ID   WP_002859150.1    Uniprot ID   A0AB36G763
Organism   Campylobacter jejuni strain CJ514CC45     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 991685..1002416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI09_RS05245 (AEI09_05275) rpsF 991828..992205 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  AEI09_RS05250 (AEI09_05280) ssb 992214..992765 (+) 552 WP_002853013.1 single-stranded DNA-binding protein -
  AEI09_RS05255 (AEI09_05285) rpsR 992776..993036 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AEI09_RS05260 (AEI09_05290) lon 993096..995471 (-) 2376 WP_002853487.1 endopeptidase La -
  AEI09_RS05265 (AEI09_05295) bamD 995488..996135 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  AEI09_RS05270 (AEI09_05300) fliW 996296..996685 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AEI09_RS05275 (AEI09_05305) proC 996685..997416 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI09_RS05280 (AEI09_05310) ctsT 997413..997715 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene
  AEI09_RS05285 (AEI09_05315) - 997712..998374 (+) 663 WP_002858296.1 hypothetical protein -
  AEI09_RS05290 (AEI09_05320) - 998371..998823 (+) 453 WP_002859148.1 hypothetical protein -
  AEI09_RS05295 (AEI09_05325) hemD 998820..999449 (-) 630 WP_002859147.1 uroporphyrinogen-III synthase -
  AEI09_RS05300 (AEI09_05330) thiE 999427..1000059 (-) 633 WP_002852670.1 thiamine phosphate synthase -
  AEI09_RS05305 (AEI09_05335) thiD 1000049..1000861 (-) 813 WP_002871792.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AEI09_RS05310 (AEI09_05340) - 1000858..1001544 (-) 687 WP_002852847.1 endonuclease III domain-containing protein -
  AEI09_RS05315 (AEI09_05345) - 1001541..1002302 (-) 762 WP_002871793.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26559.95 Da        Isoelectric Point: 8.5934

>NTDB_id=152966 AEI09_RS05275 WP_002859150.1 996685..997416(+) (proC) [Campylobacter jejuni strain CJ514CC45]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=152966 AEI09_RS05275 WP_002859150.1 996685..997416(+) (proC) [Campylobacter jejuni strain CJ514CC45]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAGCATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GAGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.588

100

0.996


Multiple sequence alignment