Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   AEI04_RS05280 Genome accession   NZ_CP012244
Coordinates   1011507..1012457 (+) Length   316 a.a.
NCBI ID   WP_002866164.1    Uniprot ID   Q9ALT6
Organism   Campylobacter jejuni strain CJ509CC45     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1006507..1017457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI04_RS05255 (AEI04_05285) - 1006868..1007728 (-) 861 WP_166738763.1 hypothetical protein -
  AEI04_RS05260 (AEI04_05290) - 1007949..1008722 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  AEI04_RS05265 (AEI04_05295) wlaTB 1008715..1009671 (+) 957 WP_052776006.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  AEI04_RS05270 (AEI04_05300) wlaTC 1009668..1010627 (+) 960 WP_002891853.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  AEI04_RS05275 (AEI04_05305) waaV 1010630..1011448 (-) 819 WP_002877115.1 glycosyltransferase family 2 protein -
  AEI04_RS05280 (AEI04_05310) waaF 1011507..1012457 (+) 951 WP_002866164.1 lipopolysaccharide heptosyltransferase II Regulator
  AEI04_RS05285 (AEI04_05315) - 1012509..1014008 (+) 1500 WP_002877116.1 MBOAT family O-acyltransferase -
  AEI04_RS05290 (AEI04_05320) - 1014156..1015133 (+) 978 WP_002866168.1 hypothetical protein -
  AEI04_RS05295 (AEI04_05325) gmhA 1015137..1015697 (-) 561 WP_052776007.1 D-sedoheptulose 7-phosphate isomerase -
  AEI04_RS05300 (AEI04_05330) rfaE1 1015694..1017079 (-) 1386 WP_002877121.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36378.95 Da        Isoelectric Point: 10.3102

>NTDB_id=152941 AEI04_RS05280 WP_002866164.1 1011507..1012457(+) (waaF) [Campylobacter jejuni strain CJ509CC45]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP

Nucleotide


Download         Length: 951 bp        

>NTDB_id=152941 AEI04_RS05280 WP_002866164.1 1011507..1012457(+) (waaF) [Campylobacter jejuni strain CJ509CC45]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ALT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.249

99.051

0.934

Multiple sequence alignment