Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   AEI07_RS05225 Genome accession   NZ_CP012243
Coordinates   993230..993961 (+) Length   243 a.a.
NCBI ID   WP_052777969.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ512CC45     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 988230..998961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI07_RS05195 (AEI07_05215) rpsF 988372..988749 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  AEI07_RS05200 (AEI07_05220) ssb 988758..989309 (+) 552 WP_002877747.1 single-stranded DNA-binding protein -
  AEI07_RS05205 (AEI07_05225) rpsR 989320..989580 (+) 261 WP_052777970.1 30S ribosomal protein S18 -
  AEI07_RS05210 (AEI07_05230) lon 989641..992016 (-) 2376 WP_002868636.1 endopeptidase La -
  AEI07_RS05215 (AEI07_05235) bamD 992033..992680 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  AEI07_RS05220 (AEI07_05240) fliW 992841..993230 (+) 390 WP_002877749.1 flagellar assembly protein FliW -
  AEI07_RS05225 (AEI07_05245) proC 993230..993961 (+) 732 WP_052777969.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI07_RS05230 (AEI07_05250) ctsT 993958..994260 (+) 303 WP_002877750.1 hypothetical protein Machinery gene
  AEI07_RS05235 (AEI07_05255) - 994257..994919 (+) 663 WP_002877751.1 hypothetical protein -
  AEI07_RS05240 (AEI07_05260) - 994916..995368 (+) 453 WP_002877757.1 hypothetical protein -
  AEI07_RS05245 (AEI07_05265) hemD 995365..995994 (-) 630 WP_002877758.1 uroporphyrinogen-III synthase -
  AEI07_RS05250 (AEI07_05270) thiE 995972..996604 (-) 633 WP_002877759.1 thiamine phosphate synthase -
  AEI07_RS05255 (AEI07_05275) thiD 996594..997406 (-) 813 WP_002877760.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AEI07_RS05260 (AEI07_05280) - 997403..998089 (-) 687 WP_002866108.1 endonuclease III domain-containing protein -
  AEI07_RS05265 (AEI07_05285) - 998086..998847 (-) 762 WP_002856328.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26620.07 Da        Isoelectric Point: 8.5934

>NTDB_id=152910 AEI07_RS05225 WP_052777969.1 993230..993961(+) (proC) [Campylobacter jejuni strain CJ512CC45]
MLYILANGAMATALAYGLKDDYEICIVGRSIEKLQALTKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIMPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSVLLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=152910 AEI07_RS05225 WP_052777969.1 993230..993961(+) (proC) [Campylobacter jejuni strain CJ512CC45]
ATGCTCTATATACTTGCAAATGGAGCTATGGCAACAGCCTTAGCCTATGGATTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCACCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTGGCTTTCAAACCTTATGCTTTAGAAAATATTGCCCAAATGCTAAAAGGACAAGCACGCATCTTA
ATCTCTGTTTTAGCTAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATGCCTAATAC
AGCAGCTAAATATAAGGCTTCAACTACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGTATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGTTTTACTAGAACATGAACATCCAGCTATCATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGTATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

98.765

100

0.988


Multiple sequence alignment