Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AEI25_RS07005 Genome accession   NZ_CP012242
Coordinates   1344914..1345225 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ055CCUA     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1339914..1350225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI25_RS06985 (AEI25_06980) ctsE 1340785..1342343 (-) 1559 Protein_1372 GspE/PulE family protein -
  AEI25_RS06990 (AEI25_06985) - 1342333..1342919 (-) 587 Protein_1373 transformation system protein -
  AEI25_RS06995 (AEI25_06990) ctsP 1342923..1343532 (-) 610 Protein_1374 ATP-binding protein -
  AEI25_RS07000 (AEI25_06995) mshL 1343525..1344936 (-) 1412 Protein_1375 pilus (MSHA type) biogenesis protein MshL -
  AEI25_RS07005 (AEI25_07000) ctsR 1344914..1345225 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  AEI25_RS07010 (AEI25_07005) nifJ 1345249..1348809 (-) 3561 WP_260627946.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEI25_RS07015 (AEI25_07010) - 1348902..1349543 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=152898 AEI25_RS07005 WP_002862131.1 1344914..1345225(-) (ctsR) [Campylobacter jejuni strain CJ055CCUA]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=152898 AEI25_RS07005 WP_002862131.1 1344914..1345225(-) (ctsR) [Campylobacter jejuni strain CJ055CCUA]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment