Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   AEI25_RS05515 Genome accession   NZ_CP012242
Coordinates   1040657..1041607 (+) Length   316 a.a.
NCBI ID   WP_260627791.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ055CCUA     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1035657..1046607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI25_RS05490 (AEI25_05490) - 1036006..1037028 (-) 1023 WP_260627787.1 hypothetical protein -
  AEI25_RS05495 (AEI25_05495) - 1037099..1037872 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  AEI25_RS05500 (AEI25_05500) wlaTB 1037865..1038821 (+) 957 WP_260627788.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  AEI25_RS05505 (AEI25_05505) wlaTC 1038818..1039777 (+) 960 WP_260627789.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  AEI25_RS05510 (AEI25_05510) - 1039780..1040598 (-) 819 WP_260627790.1 glycosyltransferase family 2 protein -
  AEI25_RS05515 (AEI25_05515) waaF 1040657..1041607 (+) 951 WP_260627791.1 lipopolysaccharide heptosyltransferase II Regulator
  AEI25_RS05520 (AEI25_05520) - 1041660..1043159 (+) 1500 WP_260627792.1 MBOAT family protein -
  AEI25_RS05525 (AEI25_05525) - 1043307..1044284 (+) 978 WP_002866168.1 hypothetical protein -
  AEI25_RS05530 (AEI25_05530) gmhA 1044288..1044848 (-) 561 WP_002868599.1 D-sedoheptulose 7-phosphate isomerase -
  AEI25_RS05535 (AEI25_05535) rfaE1 1044845..1046230 (-) 1386 WP_260627793.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36301.87 Da        Isoelectric Point: 10.2319

>NTDB_id=152891 AEI25_RS05515 WP_260627791.1 1040657..1041607(+) (waaF) [Campylobacter jejuni strain CJ055CCUA]
MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKIKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDANYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP

Nucleotide


Download         Length: 951 bp        

>NTDB_id=152891 AEI25_RS05515 WP_260627791.1 1040657..1041607(+) (waaF) [Campylobacter jejuni strain CJ055CCUA]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGTTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAATAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGCATAAAAGCTCATTTTAAGGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAATTATTTTGCTAAAGTAGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(99-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

95.208

99.051

0.943

Multiple sequence alignment