Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AEI18_RS07975 Genome accession   NZ_CP012237
Coordinates   1504896..1505207 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ075CC460     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1499896..1510207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI18_RS07955 (AEI18_07960) ctsE 1500765..1502324 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  AEI18_RS07960 (AEI18_07965) ctsX 1502314..1502901 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  AEI18_RS07965 (AEI18_07970) ctsP 1502905..1503513 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AEI18_RS07970 (AEI18_07975) ctsD 1503506..1504918 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI18_RS07975 (AEI18_07980) ctsR 1504896..1505207 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  AEI18_RS07980 (AEI18_07985) nifJ 1505231..1508791 (-) 3561 WP_032586879.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEI18_RS07985 (AEI18_07990) - 1508884..1509524 (-) 641 Protein_1574 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=152822 AEI18_RS07975 WP_002862131.1 1504896..1505207(-) (ctsR) [Campylobacter jejuni strain CJ075CC460]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=152822 AEI18_RS07975 WP_002862131.1 1504896..1505207(-) (ctsR) [Campylobacter jejuni strain CJ075CC460]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment