Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A5955_RS00515 Genome accession   NZ_CP015241
Coordinates   82751..84178 (+) Length   475 a.a.
NCBI ID   WP_000980540.1    Uniprot ID   A0A0H3JGG6
Organism   Escherichia coli strain 2013C-4465     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 77751..89178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5955_RS00480 (A5955_00475) yeeW 77934..78128 (+) 195 WP_000988600.1 DUF5983 family protein -
  A5955_RS30765 (A5955_00480) - 78162..78254 (+) 93 Protein_85 DUF957 domain-containing protein -
  A5955_RS32520 - 78543..78680 (-) 138 Protein_86 transposase domain-containing protein -
  A5955_RS32525 - 78743..78925 (+) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  A5955_RS00495 (A5955_00490) tmaR 79026..79355 (-) 330 WP_000450409.1 DUF496 family protein -
  A5955_RS00500 (A5955_00495) yeeA 79527..80585 (-) 1059 WP_001202490.1 FUSC family protein -
  A5955_RS00505 (A5955_00500) sbmC 80784..81257 (-) 474 WP_001105369.1 DNA gyrase inhibitor SbmC -
  A5955_RS00510 (A5955_00505) dacD 81376..82542 (-) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  A5955_RS00515 (A5955_00510) sbcB 82751..84178 (+) 1428 WP_000980540.1 exodeoxyribonuclease I Machinery gene
  A5955_RS00520 (A5955_00515) tsuB 84221..84448 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  A5955_RS00525 (A5955_00520) tsuA 84462..85520 (-) 1059 WP_000492328.1 thiosulfate utilization transporter TsuA/YeeE -
  A5955_RS00530 (A5955_00525) plaP 85699..87057 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  A5955_RS30780 yoeI 87047..87109 (-) 63 WP_010723108.1 membrane protein YoeI -
  A5955_RS00535 (A5955_00530) yeeY 87324..88253 (-) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  A5955_RS00540 (A5955_00535) yeeZ 88299..89123 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.77 Da        Isoelectric Point: 5.3498

>NTDB_id=152822 A5955_RS00515 WP_000980540.1 82751..84178(+) (sbcB) [Escherichia coli strain 2013C-4465]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=152822 A5955_RS00515 WP_000980540.1 82751..84178(+) (sbcB) [Escherichia coli strain 2013C-4465]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JGG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment