Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   AEH96_RS06815 Genome accession   NZ_CP012235
Coordinates   1312202..1313386 (-) Length   394 a.a.
NCBI ID   WP_002866681.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ004CC45     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1307202..1318386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEH96_RS06790 (AEH96_06820) fliL 1308350..1308886 (+) 537 WP_002855429.1 flagellar basal body-associated protein FliL -
  AEH96_RS06795 (AEH96_06825) acpS 1308886..1309233 (+) 348 WP_002866684.1 holo-ACP synthase -
  AEH96_RS06800 (AEH96_06830) - 1309234..1309653 (-) 420 WP_002862076.1 hypothetical protein -
  AEH96_RS06805 (AEH96_06835) - 1309650..1311011 (-) 1362 WP_002866683.1 cytochrome P450 -
  AEH96_RS06810 (AEH96_06840) - 1311008..1312129 (-) 1122 WP_002866682.1 hypothetical protein -
  AEH96_RS06815 (AEH96_06845) kpsS 1312202..1313386 (-) 1185 WP_002866681.1 capsule polysaccharide modification protein KpsS Regulator
  AEH96_RS06820 (AEH96_06850) - 1313383..1314480 (-) 1098 Protein_1336 capsular polysaccharide biosynthesis protein -
  AEH96_RS06825 (AEH96_06855) - 1314680..1315735 (-) 1056 WP_012006764.1 phosphonoacetaldehyde reductase -
  AEH96_RS06830 (AEH96_06860) aepY 1315728..1316924 (-) 1197 WP_012006765.1 phosphonopyruvate decarboxylase -
  AEH96_RS06835 (AEH96_06865) aepX 1316924..1318246 (-) 1323 WP_002866677.1 phosphoenolpyruvate mutase -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46900.60 Da        Isoelectric Point: 9.8632

>NTDB_id=152788 AEH96_RS06815 WP_002866681.1 1312202..1313386(-) (kpsS) [Campylobacter jejuni strain CJ004CC45]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHAKAIKVAKELEIEVWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQDIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEQTILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPILVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=152788 AEH96_RS06815 WP_002866681.1 1312202..1313386(-) (kpsS) [Campylobacter jejuni strain CJ004CC45]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAATGAAAATGAAAAAAAACCAAACCAAAGTTTTTAAACTCAATTTTAATGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACAAGGTGTAAGTGTGATGAAAAAGATCTTGAAAATTTCTATAGGGATTTTTTTCAAAGTAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGCATTATACATGCTAAGGCTATTAAAGTGGCTAAAGAATTAGAAATTGAAGT
ATGGATTTTTGAAGAAGGGTATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGAGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAGGATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGTAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGCAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGTTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTAGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGCGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAGAAGCTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCTAATCCTATTTTGGTATGTAATTTTAAGA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTACAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.208

100

0.972


Multiple sequence alignment