Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   AEH98_RS06935 Genome accession   NZ_CP012233
Coordinates   1316535..1317719 (-) Length   394 a.a.
NCBI ID   WP_002780434.1    Uniprot ID   A0A0U3A9V8
Organism   Campylobacter jejuni strain CJ020CC45     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1311535..1322719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEH98_RS06910 (AEH98_06950) fliL 1312683..1313219 (+) 537 WP_002868488.1 flagellar basal body-associated protein FliL -
  AEH98_RS06915 (AEH98_06955) acpS 1313219..1313566 (+) 348 WP_002780441.1 holo-ACP synthase -
  AEH98_RS06920 (AEH98_06960) - 1313567..1313986 (-) 420 WP_002780440.1 hypothetical protein -
  AEH98_RS06925 (AEH98_06965) - 1313983..1315344 (-) 1362 WP_002855307.1 cytochrome P450 -
  AEH98_RS06930 (AEH98_06970) - 1315341..1316462 (-) 1122 WP_002780436.1 hypothetical protein -
  AEH98_RS06935 (AEH98_06975) kpsS 1316535..1317719 (-) 1185 WP_002780434.1 capsule polysaccharide modification protein KpsS Regulator
  AEH98_RS06940 (AEH98_06980) kpsC 1317716..1319785 (-) 2070 WP_032597527.1 capsular polysaccharide biosynthesis protein -
  AEH98_RS06945 (AEH98_06985) - 1319766..1321685 (-) 1920 WP_011049978.1 hypothetical protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46824.57 Da        Isoelectric Point: 9.9369

>NTDB_id=152736 AEH98_RS06935 WP_002780434.1 1316535..1317719(-) (kpsS) [Campylobacter jejuni strain CJ020CC45]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=152736 AEH98_RS06935 WP_002780434.1 1316535..1317719(-) (kpsS) [Campylobacter jejuni strain CJ020CC45]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGACCTGTGGGAAATTTTTT
TCATCATCTTGCAATAAAAATGAAAAAAAAACAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACGAGGTGTAAGTGCGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGTATTATCCATGCTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGGGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTGGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTATGTAATTTTAAAA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3A9V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.223

100

0.982

Multiple sequence alignment