Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   AEH98_RS05665 Genome accession   NZ_CP012233
Coordinates   1066040..1066990 (+) Length   316 a.a.
NCBI ID   WP_002866164.1    Uniprot ID   Q9ALT6
Organism   Campylobacter jejuni strain CJ020CC45     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1061040..1071990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEH98_RS08700 (AEH98_05685) - 1061387..1062411 (-) 1025 Protein_1103 hypothetical protein -
  AEH98_RS05645 (AEH98_05690) - 1062482..1063255 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  AEH98_RS05650 (AEH98_05695) wlaTB 1063248..1064204 (+) 957 WP_002891855.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  AEH98_RS05655 (AEH98_05700) wlaTC 1064201..1065160 (+) 960 WP_002891853.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  AEH98_RS05660 (AEH98_05705) waaV 1065163..1065981 (-) 819 WP_002877115.1 glycosyltransferase family 2 protein -
  AEH98_RS05665 (AEH98_05710) waaF 1066040..1066990 (+) 951 WP_002866164.1 lipopolysaccharide heptosyltransferase II Regulator
  AEH98_RS05670 (AEH98_05720) - 1067042..1068542 (+) 1501 Protein_1109 MBOAT family O-acyltransferase -
  AEH98_RS05675 (AEH98_05725) - 1068690..1069667 (+) 978 WP_002866168.1 hypothetical protein -
  AEH98_RS05680 (AEH98_05730) gmhA 1069671..1070231 (-) 561 WP_002877119.1 D-sedoheptulose 7-phosphate isomerase -
  AEH98_RS05685 (AEH98_05735) rfaE1 1070228..1071613 (-) 1386 WP_002877121.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36378.95 Da        Isoelectric Point: 10.3102

>NTDB_id=152729 AEH98_RS05665 WP_002866164.1 1066040..1066990(+) (waaF) [Campylobacter jejuni strain CJ020CC45]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP

Nucleotide


Download         Length: 951 bp        

>NTDB_id=152729 AEH98_RS05665 WP_002866164.1 1066040..1066990(+) (waaF) [Campylobacter jejuni strain CJ020CC45]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ALT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.249

99.051

0.934

Multiple sequence alignment