Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   AEI06_RS05580 Genome accession   NZ_CP012232
Coordinates   1057347..1058297 (+) Length   316 a.a.
NCBI ID   WP_053869672.1    Uniprot ID   A0AAN2YWK7
Organism   Campylobacter jejuni strain CJ511CC45     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1037018..1073217 1057347..1058297 within 0


Gene organization within MGE regions


Location: 1037018..1073217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI06_RS05470 (AEI06_05505) pglI 1037018..1037947 (-) 930 WP_002866141.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  AEI06_RS05475 (AEI06_05510) pglH 1037940..1039019 (-) 1080 WP_072238645.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  AEI06_RS05480 (AEI06_05515) pglK 1039016..1040710 (-) 1695 WP_002877063.1 ABC-type lipopolysaccharide transporter PglK -
  AEI06_RS05485 (AEI06_05520) galE 1040704..1041690 (-) 987 WP_053869595.1 UDP-glucose 4-epimerase GalE -
  AEI06_RS05490 (AEI06_05525) - 1041749..1042543 (-) 795 WP_002877059.1 3'-5' exonuclease -
  AEI06_RS05495 (AEI06_05530) waaC 1042609..1043637 (+) 1029 WP_002866145.1 lipopolysaccharide heptosyltransferase I -
  AEI06_RS05500 (AEI06_05535) htrB 1043627..1044505 (+) 879 WP_002801091.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  AEI06_RS05505 (AEI06_05540) - 1044502..1045203 (+) 702 WP_002877056.1 glycosyltransferase family 2 protein -
  AEI06_RS05510 (AEI06_05545) rfbA 1045214..1046092 (+) 879 WP_002877054.1 glucose-1-phosphate thymidylyltransferase RfbA -
  AEI06_RS05515 (AEI06_05550) rfbB 1046092..1047123 (+) 1032 WP_002860226.1 dTDP-glucose 4,6-dehydratase -
  AEI06_RS05520 (AEI06_05555) wlaRA 1047126..1047566 (+) 441 WP_053869596.1 class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA -
  AEI06_RS05525 (AEI06_05560) wlaRB 1047574..1047978 (+) 405 WP_002860228.1 class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB -
  AEI06_RS05530 (AEI06_05565) - 1047968..1048410 (+) 443 Protein_1092 DapH/DapD/GlmU-related protein -
  AEI06_RS05535 (AEI06_05570) - 1048432..1048959 (+) 528 WP_002876185.1 GNAT family N-acetyltransferase -
  AEI06_RS08735 - 1048980..1049237 (+) 258 Protein_1094 hypothetical protein -
  AEI06_RS05540 (AEI06_05575) - 1049256..1050332 (+) 1077 WP_002876186.1 glycosyltransferase family 2 protein -
  AEI06_RS05545 (AEI06_05580) wlaRG 1050329..1051414 (+) 1086 WP_002876187.1 class E lipooligosaccharide biosynthesis aminotransferase WlaRG -
  AEI06_RS05550 (AEI06_05585) - 1051446..1052699 (-) 1254 WP_002876189.1 DUF2972 domain-containing protein -
  AEI06_RS05555 (AEI06_05590) - 1052696..1053718 (-) 1023 WP_002876190.1 hypothetical protein -
  AEI06_RS05560 (AEI06_05595) - 1053789..1054562 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  AEI06_RS05565 (AEI06_05600) wlaTB 1054555..1055511 (+) 957 WP_002860237.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  AEI06_RS05570 (AEI06_05605) wlaTC 1055508..1056467 (+) 960 WP_002860238.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  AEI06_RS05575 (AEI06_05610) - 1056470..1057288 (-) 819 WP_002876193.1 glycosyltransferase family 2 protein -
  AEI06_RS05580 (AEI06_05615) waaF 1057347..1058297 (+) 951 WP_053869672.1 lipopolysaccharide heptosyltransferase II Regulator
  AEI06_RS05585 (AEI06_05620) - 1058349..1059848 (+) 1500 WP_002877116.1 MBOAT family O-acyltransferase -
  AEI06_RS05590 (AEI06_05625) - 1059996..1060973 (+) 978 WP_002866168.1 hypothetical protein -
  AEI06_RS05595 (AEI06_05630) gmhA 1060977..1061537 (-) 561 WP_002877119.1 D-sedoheptulose 7-phosphate isomerase -
  AEI06_RS05600 (AEI06_05635) rfaE1 1061534..1062919 (-) 1386 WP_002877121.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  AEI06_RS05605 (AEI06_05640) rfaD 1062912..1063865 (-) 954 WP_002877123.1 ADP-glyceromanno-heptose 6-epimerase -
  AEI06_RS05610 (AEI06_05645) gmhB 1063866..1064426 (-) 561 WP_002877124.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  AEI06_RS05615 (AEI06_05650) - 1064508..1064810 (+) 303 WP_002852762.1 c-type cytochrome -
  AEI06_RS05620 (AEI06_05655) ccoS 1064833..1065039 (-) 207 WP_002877126.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  AEI06_RS05625 (AEI06_05660) - 1065036..1067393 (-) 2358 WP_072238644.1 heavy metal translocating P-type ATPase -
  AEI06_RS05630 (AEI06_05665) rho 1067503..1068801 (+) 1299 WP_002853705.1 transcription termination factor Rho -
  AEI06_RS05635 (AEI06_05670) dnaX 1068805..1070334 (+) 1530 WP_053869673.1 DNA polymerase III subunit gamma/tau -
  AEI06_RS05640 (AEI06_05675) - 1070331..1070852 (-) 522 WP_002853472.1 DUF2165 family protein -
  AEI06_RS05645 (AEI06_05680) copA 1070924..1073023 (-) 2100 WP_053869674.1 copper-translocating P-type ATPase CopA -
  AEI06_RS05650 (AEI06_05685) - 1073023..1073217 (-) 195 WP_002852760.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36215.73 Da        Isoelectric Point: 10.2575

>NTDB_id=152701 AEI06_RS05580 WP_053869672.1 1057347..1058297(+) (waaF) [Campylobacter jejuni strain CJ511CC45]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP

Nucleotide


Download         Length: 951 bp        

>NTDB_id=152701 AEI06_RS05580 WP_053869672.1 1057347..1058297(+) (waaF) [Campylobacter jejuni strain CJ511CC45]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.61

99.051

0.927

Multiple sequence alignment