Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   A4265_RS04750 Genome accession   NZ_CP015238
Coordinates   924287..925357 (-) Length   356 a.a.
NCBI ID   WP_063631904.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NS53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 919287..930357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4265_RS04730 (A4265_04445) citX 919872..920450 (+) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -
  A4265_RS04735 (A4265_04450) - 920465..921859 (+) 1395 WP_063631902.1 oxaloacetate decarboxylase subunit alpha -
  A4265_RS04740 (A4265_04455) citC 921970..923022 (-) 1053 WP_030126672.1 [citrate (pro-3S)-lyase] ligase -
  A4265_RS04745 (A4265_04460) - 923111..923593 (-) 483 WP_063631903.1 PASTA domain-containing protein -
  A4265_RS04750 (A4265_04465) xerS 924287..925357 (-) 1071 WP_063631904.1 tyrosine recombinase XerS Machinery gene
  A4265_RS04755 (A4265_04470) - 925845..926543 (+) 699 WP_002993300.1 XRE family transcriptional regulator -
  A4265_RS04760 (A4265_04475) ffh 926678..928240 (-) 1563 WP_002993302.1 signal recognition particle protein -
  A4265_RS04765 (A4265_04480) - 928255..928587 (-) 333 WP_002989745.1 putative DNA-binding protein -
  A4265_RS04770 (A4265_04485) - 928685..929383 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41485.59 Da        Isoelectric Point: 9.5552

>NTDB_id=152693 A4265_RS04750 WP_063631904.1 924287..925357(-) (xerS) [Streptococcus pyogenes strain NS53]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVSPHKLRHTLATRLYDVT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=152693 A4265_RS04750 WP_063631904.1 924287..925357(-) (xerS) [Streptococcus pyogenes strain NS53]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGTCTCCTCACAAATTGCGTCATACGCTAGCGACAAGATTATATGATGTTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.056

100

0.801