Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AEI12_RS06905 Genome accession   NZ_CP012230
Coordinates   1343305..1343616 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ517CC45     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338305..1348616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI12_RS06885 (AEI12_06910) ctsE 1339175..1340734 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  AEI12_RS06890 (AEI12_06915) ctsX 1340724..1341311 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  AEI12_RS06895 (AEI12_06920) ctsP 1341315..1341922 (-) 608 Protein_1351 ATP-binding protein -
  AEI12_RS06900 (AEI12_06925) ctsD 1341915..1343327 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI12_RS06905 (AEI12_06930) ctsR 1343305..1343616 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  AEI12_RS06910 (AEI12_06935) nifJ 1343640..1347200 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEI12_RS06915 (AEI12_06940) - 1347293..1347934 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=152687 AEI12_RS06905 WP_002862131.1 1343305..1343616(-) (ctsR) [Campylobacter jejuni strain CJ517CC45]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=152687 AEI12_RS06905 WP_002862131.1 1343305..1343616(-) (ctsR) [Campylobacter jejuni strain CJ517CC45]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment