Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | AEI12_RS05355 | Genome accession | NZ_CP012230 |
| Coordinates | 1027160..1028110 (+) | Length | 316 a.a. |
| NCBI ID | WP_002866164.1 | Uniprot ID | Q9ALT6 |
| Organism | Campylobacter jejuni strain CJ517CC45 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1005806..1043030 | 1027160..1028110 | within | 0 |
Gene organization within MGE regions
Location: 1005806..1043030
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AEI12_RS05235 (AEI12_05280) | pglI | 1005806..1006735 (-) | 930 | WP_002866141.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| AEI12_RS05240 (AEI12_05285) | pglH | 1006728..1007807 (-) | 1080 | WP_072238645.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| AEI12_RS05245 (AEI12_05290) | pglK | 1007804..1009498 (-) | 1695 | WP_002877063.1 | ABC-type lipopolysaccharide transporter PglK | - |
| AEI12_RS05250 (AEI12_05295) | galE | 1009492..1010478 (-) | 987 | WP_002877060.1 | UDP-glucose 4-epimerase GalE | - |
| AEI12_RS05255 (AEI12_05300) | - | 1010537..1011331 (-) | 795 | WP_002877059.1 | 3'-5' exonuclease | - |
| AEI12_RS05260 (AEI12_05305) | waaC | 1011397..1012425 (+) | 1029 | WP_002866145.1 | lipopolysaccharide heptosyltransferase I | - |
| AEI12_RS05265 (AEI12_05310) | htrB | 1012415..1013293 (+) | 879 | WP_052805983.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| AEI12_RS05270 (AEI12_05315) | - | 1013290..1013991 (+) | 702 | WP_052805984.1 | glycosyltransferase family 2 protein | - |
| AEI12_RS05275 (AEI12_05320) | rfbA | 1014002..1014880 (+) | 879 | WP_002869595.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| AEI12_RS05280 (AEI12_05325) | rfbB | 1014880..1015911 (+) | 1032 | WP_002860226.1 | dTDP-glucose 4,6-dehydratase | - |
| AEI12_RS05285 (AEI12_05330) | wlaRA | 1015914..1016339 (+) | 426 | WP_002860227.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA | - |
| AEI12_RS05290 (AEI12_05335) | wlaRB | 1016361..1016765 (+) | 405 | WP_002860228.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB | - |
| AEI12_RS05295 (AEI12_05340) | - | 1016755..1017198 (+) | 444 | WP_020247173.1 | N-acetyltransferase | - |
| AEI12_RS05300 (AEI12_05345) | - | 1017220..1017747 (+) | 528 | WP_002869598.1 | GNAT family N-acetyltransferase | - |
| AEI12_RS08465 | - | 1017768..1018025 (+) | 258 | Protein_1038 | hypothetical protein | - |
| AEI12_RS05305 (AEI12_05350) | - | 1018044..1019108 (+) | 1065 | WP_002869599.1 | glycosyltransferase family 2 protein | - |
| AEI12_RS05310 (AEI12_05355) | - | 1019121..1020173 (+) | 1053 | WP_002869601.1 | glycosyltransferase family 2 protein | - |
| AEI12_RS05315 (AEI12_05360) | wlaRG | 1020139..1021224 (+) | 1086 | WP_025998025.1 | class E lipooligosaccharide biosynthesis aminotransferase WlaRG | - |
| AEI12_RS05320 (AEI12_05365) | - | 1021251..1022510 (-) | 1260 | WP_022552326.1 | DUF2972 domain-containing protein | - |
| AEI12_RS08400 (AEI12_05370) | - | 1022507..1023531 (-) | 1025 | Protein_1043 | hypothetical protein | - |
| AEI12_RS05335 (AEI12_05375) | - | 1023602..1024375 (+) | 774 | WP_002866160.1 | glycosyltransferase family 25 protein | - |
| AEI12_RS05340 (AEI12_05380) | wlaTB | 1024368..1025324 (+) | 957 | WP_002891855.1 | class E lipooligosaccharide biosynthesis protein WlaTB | - |
| AEI12_RS05345 (AEI12_05385) | wlaTC | 1025321..1026280 (+) | 960 | WP_002891853.1 | class E lipooligosaccharide biosynthesis protein WlaTC | - |
| AEI12_RS05350 (AEI12_05390) | waaV | 1026283..1027101 (-) | 819 | WP_002877115.1 | glycosyltransferase family 2 protein | - |
| AEI12_RS05355 (AEI12_05395) | waaF | 1027160..1028110 (+) | 951 | WP_002866164.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| AEI12_RS05360 (AEI12_05400) | - | 1028162..1029661 (+) | 1500 | WP_002877116.1 | MBOAT family O-acyltransferase | - |
| AEI12_RS05365 (AEI12_05405) | - | 1029809..1030786 (+) | 978 | WP_002866168.1 | hypothetical protein | - |
| AEI12_RS05370 (AEI12_05410) | gmhA | 1030790..1031350 (-) | 561 | WP_002877119.1 | D-sedoheptulose 7-phosphate isomerase | - |
| AEI12_RS05375 (AEI12_05415) | rfaE1 | 1031347..1032732 (-) | 1386 | WP_022552328.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| AEI12_RS05380 (AEI12_05420) | rfaD | 1032725..1033678 (-) | 954 | WP_022552329.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| AEI12_RS05385 (AEI12_05425) | gmhB | 1033679..1034239 (-) | 561 | WP_002877124.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| AEI12_RS05390 (AEI12_05430) | - | 1034321..1034623 (+) | 303 | WP_022552330.1 | c-type cytochrome | - |
| AEI12_RS05395 (AEI12_05435) | ccoS | 1034646..1034852 (-) | 207 | WP_002877126.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| AEI12_RS05400 (AEI12_05440) | - | 1034849..1037206 (-) | 2358 | WP_072238644.1 | heavy metal translocating P-type ATPase | - |
| AEI12_RS05405 (AEI12_05445) | rho | 1037316..1038614 (+) | 1299 | WP_002853705.1 | transcription termination factor Rho | - |
| AEI12_RS05410 (AEI12_05450) | dnaX | 1038618..1040147 (+) | 1530 | WP_002866174.1 | DNA polymerase III subunit gamma/tau | - |
| AEI12_RS05415 (AEI12_05455) | - | 1040144..1040665 (-) | 522 | WP_002853472.1 | DUF2165 family protein | - |
| AEI12_RS05420 (AEI12_05460) | copA | 1040737..1042836 (-) | 2100 | WP_002866176.1 | copper-translocating P-type ATPase CopA | - |
| AEI12_RS05425 (AEI12_05465) | - | 1042836..1043030 (-) | 195 | WP_002870481.1 | heavy-metal-associated domain-containing protein | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36378.95 Da Isoelectric Point: 10.3102
>NTDB_id=152675 AEI12_RS05355 WP_002866164.1 1027160..1028110(+) (waaF) [Campylobacter jejuni strain CJ517CC45]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
Nucleotide
Download Length: 951 bp
>NTDB_id=152675 AEI12_RS05355 WP_002866164.1 1027160..1028110(+) (waaF) [Campylobacter jejuni strain CJ517CC45]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.249 |
99.051 |
0.934 |