Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AEI19_RS07330 Genome accession   NZ_CP012228
Coordinates   1408794..1409105 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain CJ015CC464     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1403794..1414105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI19_RS07310 (AEI19_07335) ctsE 1404663..1406222 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  AEI19_RS07315 (AEI19_07340) ctsX 1406212..1406799 (-) 588 WP_002934760.1 hypothetical protein Machinery gene
  AEI19_RS07320 (AEI19_07345) ctsP 1406803..1407411 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AEI19_RS07325 (AEI19_07350) ctsD 1407404..1408816 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI19_RS07330 (AEI19_07355) ctsR 1408794..1409105 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  AEI19_RS07335 (AEI19_07360) nifJ 1409129..1412689 (-) 3561 WP_002934762.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEI19_RS07340 (AEI19_07365) - 1412782..1413423 (-) 642 WP_002872339.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=152634 AEI19_RS07330 WP_002855438.1 1408794..1409105(-) (ctsR) [Campylobacter jejuni strain CJ015CC464]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=152634 AEI19_RS07330 WP_002855438.1 1408794..1409105(-) (ctsR) [Campylobacter jejuni strain CJ015CC464]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment