Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   GJ11_RS21025 Genome accession   NZ_CP015229
Coordinates   3836038..3836514 (+) Length   158 a.a.
NCBI ID   WP_065227647.1    Uniprot ID   -
Organism   Escherichia coli strain 06-00048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3831038..3841514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJ11_RS21000 (GJ11_19475) - 3831169..3833685 (+) 2517 WP_065227642.1 hypothetical protein -
  GJ11_RS21005 (GJ11_19480) - 3833761..3834216 (+) 456 WP_065227643.1 IrmA family protein -
  GJ11_RS21010 (GJ11_19485) - 3834295..3834528 (+) 234 WP_065227644.1 DUF905 family protein -
  GJ11_RS21015 (GJ11_19490) - 3834628..3835446 (+) 819 WP_065227645.1 DUF932 domain-containing protein -
  GJ11_RS21020 (GJ11_19495) - 3835537..3836022 (+) 486 WP_065227646.1 antirestriction protein -
  GJ11_RS21025 (GJ11_19500) radC 3836038..3836514 (+) 477 WP_065227647.1 JAB domain-containing protein Machinery gene
  GJ11_RS21030 (GJ11_19505) - 3836583..3836804 (+) 222 WP_000692300.1 DUF987 domain-containing protein -
  GJ11_RS21035 (GJ11_19510) - 3836883..3837251 (+) 369 WP_065228272.1 type IV toxin-antitoxin system YeeU family antitoxin -
  GJ11_RS21040 (GJ11_19515) - 3837341..3837715 (+) 375 WP_065227648.1 TA system toxin CbtA family protein -
  GJ11_RS21045 (GJ11_19520) - 3837712..3838200 (+) 489 WP_065227649.1 DUF5983 family protein -
  GJ11_RS21050 (GJ11_19525) - 3838212..3838409 (+) 198 WP_001374283.1 DUF957 domain-containing protein -
  GJ11_RS21055 (GJ11_19530) - 3838494..3839336 (+) 843 WP_065227650.1 DUF4942 domain-containing protein -
  GJ11_RS21060 (GJ11_19535) yghD 3839616..3840152 (-) 537 WP_065227651.1 GspM family type II secretion system protein YghD -
  GJ11_RS21065 (GJ11_19540) gspL 3840157..3841332 (-) 1176 WP_065227652.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17618.24 Da        Isoelectric Point: 6.9242

>NTDB_id=152608 GJ11_RS21025 WP_065227647.1 3836038..3836514(+) (radC) [Escherichia coli strain 06-00048]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPQEVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=152608 GJ11_RS21025 WP_065227647.1 3836038..3836514(+) (radC) [Escherichia coli strain 06-00048]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCAGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment