Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | AEI21_RS05425 | Genome accession | NZ_CP012224 |
| Coordinates | 1038334..1039284 (+) | Length | 316 a.a. |
| NCBI ID | WP_052775522.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain CJ066CC508 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1020654..1049400 | 1038334..1039284 | within | 0 |
Gene organization within MGE regions
Location: 1020654..1049400
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AEI21_RS05340 (AEI21_05325) | pglI | 1020654..1021583 (-) | 930 | WP_002866141.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| AEI21_RS05345 (AEI21_05330) | pglH | 1021576..1022655 (-) | 1080 | WP_079264296.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| AEI21_RS05350 (AEI21_05335) | pglK | 1022652..1024346 (-) | 1695 | WP_002921645.1 | ABC-type lipopolysaccharide transporter PglK | - |
| AEI21_RS05355 (AEI21_05340) | galE | 1024340..1025326 (-) | 987 | WP_002921651.1 | UDP-glucose 4-epimerase GalE | - |
| AEI21_RS05360 (AEI21_05345) | - | 1025385..1026179 (-) | 795 | WP_002921656.1 | 3'-5' exonuclease | - |
| AEI21_RS05365 (AEI21_05350) | waaC | 1026246..1027274 (+) | 1029 | WP_002852873.1 | lipopolysaccharide heptosyltransferase I | - |
| AEI21_RS05370 (AEI21_05355) | htrB | 1027264..1028151 (+) | 888 | WP_002852805.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| AEI21_RS05375 (AEI21_05360) | - | 1028148..1029696 (+) | 1549 | Protein_1049 | glycosyltransferase | - |
| AEI21_RS05380 (AEI21_05370) | - | 1029700..1030869 (+) | 1170 | WP_052775523.1 | glycosyltransferase family 2 protein | - |
| AEI21_RS05385 (AEI21_05375) | - | 1030939..1031982 (+) | 1044 | WP_002870498.1 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| AEI21_RS05390 (AEI21_05380) | - | 1031968..1032873 (-) | 906 | WP_002924067.1 | glycosyltransferase family 2 protein | - |
| AEI21_RS05395 (AEI21_05385) | - | 1032962..1033837 (+) | 876 | WP_002878823.1 | alpha-2,3-sialyltransferase | - |
| AEI21_RS05400 (AEI21_05390) | neuB | 1033838..1034878 (+) | 1041 | WP_002922930.1 | N-acetylneuraminate synthase | - |
| AEI21_RS05405 (AEI21_05395) | neuC | 1034875..1035993 (+) | 1119 | WP_002922931.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| AEI21_RS05410 (AEI21_05400) | - | 1035990..1036655 (+) | 666 | WP_002922934.1 | acylneuraminate cytidylyltransferase family protein | - |
| AEI21_RS08720 | - | 1036643..1036834 (+) | 192 | WP_002922937.1 | hypothetical protein | - |
| AEI21_RS08770 (AEI21_05405) | - | 1036800..1037471 (+) | 672 | WP_284497596.1 | CatB-related O-acetyltransferase | - |
| AEI21_RS05420 (AEI21_05410) | - | 1037463..1038275 (-) | 813 | WP_002922943.1 | glycosyltransferase family 2 protein | - |
| AEI21_RS05425 (AEI21_05415) | waaF | 1038334..1039284 (+) | 951 | WP_052775522.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| AEI21_RS08805 (AEI21_05420) | - | 1039270..1040044 (-) | 775 | Protein_1061 | glycosyltransferase family 25 protein | - |
| AEI21_RS05435 (AEI21_05425) | gmhA | 1040044..1040604 (-) | 561 | WP_002922730.1 | D-sedoheptulose 7-phosphate isomerase | - |
| AEI21_RS05440 (AEI21_05430) | rfaE1 | 1040601..1041986 (-) | 1386 | WP_002922733.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| AEI21_RS05445 (AEI21_05435) | rfaD | 1041979..1042932 (-) | 954 | WP_002922734.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| AEI21_RS05450 (AEI21_05440) | gmhB | 1042933..1043493 (-) | 561 | WP_002878815.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| AEI21_RS05455 (AEI21_05445) | - | 1043575..1043877 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| AEI21_RS05460 (AEI21_05450) | ccoS | 1043900..1044106 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| AEI21_RS05465 (AEI21_05455) | - | 1044103..1046460 (-) | 2358 | WP_079264324.1 | heavy metal translocating P-type ATPase | - |
| AEI21_RS05470 (AEI21_05460) | rho | 1046569..1047867 (+) | 1299 | WP_002922739.1 | transcription termination factor Rho | - |
| AEI21_RS05475 (AEI21_05465) | dnaX | 1047871..1049400 (+) | 1530 | WP_002866174.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36293.94 Da Isoelectric Point: 10.3523
>NTDB_id=152567 AEI21_RS05425 WP_052775522.1 1038334..1039284(+) (waaF) [Campylobacter jejuni strain CJ066CC508]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQTRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQTRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI
Nucleotide
Download Length: 951 bp
>NTDB_id=152567 AEI21_RS05425 WP_052775522.1 1038334..1039284(+) (waaF) [Campylobacter jejuni strain CJ066CC508]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACATTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGCATGAAAGATTTAAAGCCTGAAGTGATTTTAAAAGCAATTCAAAATTTAATTAATATCTAA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACATTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGCATGAAAGATTTAAAGCCTGAAGTGATTTTAAAAGCAATTCAAAATTTAATTAATATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
93.949 |
99.367 |
0.934 |