Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   AEI22_RS04845 Genome accession   NZ_CP012220
Coordinates   921139..921870 (+) Length   243 a.a.
NCBI ID   WP_052779713.1    Uniprot ID   A0A5T0XX92
Organism   Campylobacter jejuni strain CJ090CC1332     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 916139..926870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI22_RS04815 (AEI22_04805) rpsF 916281..916658 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  AEI22_RS04820 (AEI22_04810) ssb 916667..917218 (+) 552 WP_002921394.1 single-stranded DNA-binding protein -
  AEI22_RS04825 (AEI22_04815) rpsR 917229..917489 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AEI22_RS04830 (AEI22_04820) lon 917550..919925 (-) 2376 WP_052779714.1 endopeptidase La -
  AEI22_RS04835 (AEI22_04825) - 919942..920589 (-) 648 WP_002936691.1 outer membrane protein assembly factor BamD -
  AEI22_RS04840 (AEI22_04830) fliW 920750..921139 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AEI22_RS04845 (AEI22_04835) proC 921139..921870 (+) 732 WP_052779713.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI22_RS04850 (AEI22_04840) ctsT 921867..922169 (+) 303 WP_002936694.1 type II secretion system protein Machinery gene
  AEI22_RS04855 (AEI22_04845) - 922166..922828 (+) 663 WP_002936695.1 hypothetical protein -
  AEI22_RS04860 (AEI22_04850) - 922825..923277 (+) 453 WP_052817076.1 hypothetical protein -
  AEI22_RS04865 (AEI22_04855) hemD 923274..923903 (-) 630 WP_020247026.1 uroporphyrinogen-III synthase -
  AEI22_RS04870 (AEI22_04860) thiE 923881..924513 (-) 633 WP_052779711.1 thiamine phosphate synthase -
  AEI22_RS04875 (AEI22_04865) thiD 924503..925315 (-) 813 WP_052779729.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AEI22_RS04880 (AEI22_04870) - 925312..925998 (-) 687 WP_052779710.1 endonuclease III domain-containing protein -
  AEI22_RS04885 (AEI22_04875) - 925995..926756 (-) 762 WP_052779709.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26594.03 Da        Isoelectric Point: 8.9106

>NTDB_id=152482 AEI22_RS04845 WP_052779713.1 921139..921870(+) (proC) [Campylobacter jejuni strain CJ090CC1332]
MLYILANGAMATALAYGLKDSYEICIVGRSLEKLQTLAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIMPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
STK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=152482 AEI22_RS04845 WP_052779713.1 921139..921870(+) (proC) [Campylobacter jejuni strain CJ090CC1332]
ATGCTCTATATACTTGCAAATGGAGCTATGGCAACAGCCTTAGCCTATGGATTAAAAGATAGTTATGAAATTTGCATAGT
AGGAAGAAGCTTAGAAAAGCTTCAAACTCTTGCCAAGGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAGG
GCAAAGATGTTATTTTGGCTTTCAAACCTTATGCTTTAGAAAATATTGCCCAAATGCTAAAAGGACAAGCACGCATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATGCCTAATAC
AGCAGCTAAATATAAGGCTTCAACTACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTATCAAAAGAACTTAGTCTTAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCCATTATTAAAGAAAATATTTGCTCTCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCACTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5T0XX92

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

97.942

100

0.979


Multiple sequence alignment