Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   A4A60_RS21415 Genome accession   NZ_CP015222
Coordinates   4042044..4042733 (-) Length   229 a.a.
NCBI ID   WP_069837880.1    Uniprot ID   -
Organism   Bacillus subtilis strain HRBS-10TDI13     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4037044..4047733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4A60_RS21395 (A4A60_21405) yxeA 4037949..4038296 (-) 348 WP_003227084.1 YxeA family protein -
  A4A60_RS21400 (A4A60_21410) yxdM 4038310..4040178 (-) 1869 WP_069837878.1 ABC transporter permease YxdM -
  A4A60_RS21405 (A4A60_21415) yxdL 4040153..4040926 (-) 774 WP_024572301.1 ABC transporter ATP-binding protein YxdL -
  A4A60_RS21410 (A4A60_21420) yxdK 4041070..4042047 (-) 978 WP_069837879.1 two-component system sensor histidine kinase YxdK -
  A4A60_RS21415 (A4A60_21425) braR 4042044..4042733 (-) 690 WP_069837880.1 two-component system response regulator YxdJ Regulator
  A4A60_RS21420 (A4A60_21430) iolJ 4042841..4043713 (-) 873 WP_069837881.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  A4A60_RS21425 (A4A60_21435) iolI 4043734..4044570 (-) 837 WP_014481412.1 2-keto-myo-inositol isomerase -
  A4A60_RS21430 (A4A60_21440) iolH 4044656..4045525 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  A4A60_RS21435 (A4A60_21445) iolG 4045545..4046579 (-) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26601.37 Da        Isoelectric Point: 4.8564

>NTDB_id=152476 A4A60_RS21415 WP_069837880.1 4042044..4042733(-) (braR) [Bacillus subtilis strain HRBS-10TDI13]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=152476 A4A60_RS21415 WP_069837880.1 4042044..4042733(-) (braR) [Bacillus subtilis strain HRBS-10TDI13]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATACCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAACGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406