Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AEI20_RS08560 Genome accession   NZ_CP012217
Coordinates   1619083..1619394 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain CJ071CC464     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1614083..1624394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI20_RS08540 (AEI20_08555) ctsE 1614952..1616511 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  AEI20_RS08545 (AEI20_08560) ctsX 1616501..1617088 (-) 588 WP_002851370.1 membrane protein Machinery gene
  AEI20_RS08550 (AEI20_08565) ctsP 1617092..1617700 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AEI20_RS08555 (AEI20_08570) ctsD 1617693..1619105 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI20_RS08560 (AEI20_08575) ctsR 1619083..1619394 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  AEI20_RS08565 (AEI20_08580) nifJ 1619418..1622978 (-) 3561 WP_002934762.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEI20_RS08570 (AEI20_08585) - 1623071..1623712 (-) 642 WP_002934763.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=152473 AEI20_RS08560 WP_002855438.1 1619083..1619394(-) (ctsR) [Campylobacter jejuni strain CJ071CC464]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=152473 AEI20_RS08560 WP_002855438.1 1619083..1619394(-) (ctsR) [Campylobacter jejuni strain CJ071CC464]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment