Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   AEI26_RS07085 Genome accession   NZ_CP012212
Coordinates   1353450..1354634 (-) Length   394 a.a.
NCBI ID   WP_070298600.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ017CCUA     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1348450..1359634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI26_RS07060 (AEI26_07000) fliL 1349598..1350134 (+) 537 WP_002855429.1 flagellar basal body-associated protein FliL -
  AEI26_RS07065 (AEI26_07005) acpS 1350135..1350482 (+) 348 WP_002866684.1 holo-ACP synthase -
  AEI26_RS07070 (AEI26_07010) - 1350483..1350902 (-) 420 WP_002880391.1 hypothetical protein -
  AEI26_RS07075 (AEI26_07015) - 1350899..1352260 (-) 1362 WP_002936391.1 cytochrome P450 -
  AEI26_RS07080 (AEI26_07020) - 1352257..1353378 (-) 1122 WP_070298599.1 DUF829 domain-containing protein -
  AEI26_RS07085 (AEI26_07025) kpsS 1353450..1354634 (-) 1185 WP_070298600.1 capsule polysaccharide modification protein KpsS Regulator
  AEI26_RS07090 (AEI26_07030) kpsC 1354631..1356694 (-) 2064 WP_115801404.1 capsular polysaccharide biosynthesis protein -
  AEI26_RS09155 - 1356760..1357956 (-) 1197 WP_251823130.1 hypothetical protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46855.55 Da        Isoelectric Point: 9.8256

>NTDB_id=152330 AEI26_RS07085 WP_070298600.1 1353450..1354634(-) (kpsS) [Campylobacter jejuni strain CJ017CCUA]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHAKAIKVAKELGIEVWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQDIFTQESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEEIILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLTQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPILVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=152330 AEI26_RS07085 WP_070298600.1 1353450..1354634(-) (kpsS) [Campylobacter jejuni strain CJ017CCUA]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAATGAAAATGAAAAAAAACCAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACAAGGTGTAAGTGTGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGCATTATACATGCTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAGT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGAGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAGATATTTTTACCCAAGAAAGTATAAAAGAAATTCCGGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTAGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCAATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAATCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGTTATAAGAATTATTCTAAACTCATAAATGATTTAACTCAAAAATATCATGTTG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTAGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAGAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCTAATCCTATTTTAGTATGTAATTTTAAGA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

96.954

100

0.97

Multiple sequence alignment